Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20590 269 / 6e-87 Reticulon family protein (.1.2) AT4G28430 249 / 8e-79 Reticulon family protein (.1) AT5G58000 129 / 2e-33 Reticulon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002173 [exp] 387 / 1e-134 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2) Lus10036611 [exp] 112 / 4e-27 AT5G58000 325 / 4e-105 Reticulon family protein (.1) Lus10035829 [exp] 109 / 4e-26 AT5G58000 326 / 1e-105 Reticulon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137700 [exp] 327 / 5e-109 AT2G20590 330 / 2e-109 Reticulon family protein (.1.2) Potri.017G014300 [exp] 314 / 2e-104 AT4G28430 283 / 5e-91 Reticulon family protein (.1) Potri.006G185700 [exp] 117 / 1e-28 AT5G58000 339 / 7e-109 Reticulon family protein (.1) Potri.018G108200 [exp] 115 / 6e-28 AT5G58000 344 / 1e-110 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10039890 pacid=23165350 polypeptide=Lus10039890 locus=Lus10039890.g ID=Lus10039890.BGIv1.0 annot-version=v1.0 ATGGAGATTGATTCAAATCTTCCCAGCTTCACACAGACACCAACTCCAACCGCTCCCGCCAAATCAGCTTCACGATTAGCTCGAACCACCCCCTGTTCGC TCGCAGGCAAAGAGCCACCGCCTCATCTCTCTTTTGATCTCGTATTCTCACCGTCGCCTAAGAATCCACCTCCTTACACGTCACCGGCGGGCCCGGAAAT CCAAGAACAGAGTCTCTCAGGTGGCAAGTTTGGGATGCGCTTCGCCAAGAAATACAAGGAGAGAAAGACCGGCGGTGGAAGATCCAGGAAGGAGAAGGTT TCTTCAGCTGGTCCGGCTTTGGCGAAAGCTGATGATTACGACGGAAGCAATTTGGATAGGCTTGCTGCGTGTATACATGATCTCGTCATGTGGGAAGACG TTGCCAAGTCCAGCCTCTGGTTTGGATTTGGCTGCTTGTGTTTCTTATCTTCTTGCTTTGCAAAGGGTATCAACTTCAGCCTGTTTTCTGCAAGTTCCCA ACTCGGACTCTTGTTCCTTGGAGCATCATTCGTCACAAACTCAATATGCGAAAGAAATAACATTGACAAGGGACGAGAAGTTAGGCTGAGGGAAGAGGAT ATCCTTAGATTAGGCAGATTGATACTTCCTGCTGCAAACCTTGCAATCTCAAAGACCAGGAAGCTCTTCTCTGGTGAACCATCGATGACCCTCAAAGTGA TTCCTTTCTTGCTTCTCGGAGCTGAGTATGGCCACTTCATAACCATACGGAGGCTCTTTGCATTAGGTTTTTTTGTCAACTTCACAATCCCAAAGCTGTA CTCATGCTACTCCAATCAGATAACACAGAAAGTTGACAACACGAAATGTAGAATGTTGGAGACATGGGGCTACTGCATTTTCACAGTGTTCATAGTTCTG GTCATACTCCGTTGCTGCCGGCAGCATCTGGTGCTTAATAAGGAAGAAGAGATAGCAGCTGAAGAAGAAGTACAAGGAGAGAATAAAGCAGTTATGGAAG ATCTGGAGGTCCAACAGGAAGAACAGGAAGAGGCACTGCCACTGGTGGTGGCAACAGAAGTGAAGTCGCAATAG
AA sequence Show only first row Show all	>Lus10039890 pacid=23165350 polypeptide=Lus10039890 locus=Lus10039890.g ID=Lus10039890.BGIv1.0 annot-version=v1.0 MEIDSNLPSFTQTPTPTAPAKSASRLARTTPCSLAGKEPPPHLSFDLVFSPSPKNPPPYTSPAGPEIQEQSLSGGKFGMRFAKKYKERKTGGGRSRKEKV SSAGPALAKADDYDGSNLDRLAACIHDLVMWEDVAKSSLWFGFGCLCFLSSCFAKGINFSLFSASSQLGLLFLGASFVTNSICERNNIDKGREVRLREED ILRLGRLILPAANLAISKTRKLFSGEPSMTLKVIPFLLLGAEYGHFITIRRLFALGFFVNFTIPKLYSCYSNQITQKVDNTKCRMLETWGYCIFTVFIVL VILRCCRQHLVLNKEEEIAAEEEVQGENKAVMEDLEVQQEEQEEALPLVVATEVKSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	0	1
AT2G20590			Reticulon family protein (.1.2...		Lus10002173 [exp]	1.0	0.9841
AT1G65710			unknown protein		Lus10031373 [exp]	2.4	0.9698
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	2.8	0.9716
AT3G15550			unknown protein		Lus10025758 [exp]	3.0	0.9732
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	3.2	0.9773
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	4.9	0.9611
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037595 [exp]	5.8	0.9494
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	6.7	0.9714
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	9.5	0.9514
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	11.0	0.9574

Compare expression of checked genes

Lus10039890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.