Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28010 58 / 3e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 57 / 8e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70840 47 / 6e-07 MLP31 MLP-like protein 31 (.1) AT1G35260 44 / 8e-06 MLP165 MLP-like protein 165 (.1) AT1G70830 43 / 2e-05 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 43 / 2e-05 MLP34 MLP-like protein 34 (.1.2.3) AT1G23130 42 / 2e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23120 41 / 8e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002174 [exp] 283 / 7e-100 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002175 [exp] 243 / 8e-84 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039863 [exp] 149 / 1e-46 AT5G28010 42 / 3e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039864 [exp] 134 / 1e-39 AT5G54160 65 / 7e-12 O-methyltransferase 1 (.1) Lus10039892 [exp] 122 / 2e-37 ND 41 / 9e-06 Lus10018627 [exp] 96 / 2e-26 ND / Lus10002176 [exp] 81 / 5e-20 AT1G24020 65 / 7e-14 MLP-like protein 423 (.1.2) Lus10030840 [exp] 54 / 1e-09 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10012742 [exp] 52 / 8e-09 AT1G70830 158 / 6e-50 MLP-like protein 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131100 [exp] 39 / 0.0003 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.004G051500 [exp] 38 / 0.0006 AT5G28010 69 / 4e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10039891 pacid=23165106 polypeptide=Lus10039891 locus=Lus10039891.g ID=Lus10039891.BGIv1.0 annot-version=v1.0 ATGGCGGCTCAGACTCACAAGCTAGAGGTTGAGGTAACAATGAAATCACCAGAGAAGCTGGTGTCTTTCTACAGGAACCATGTCCTCGAAACGCCAAAAC TGGCTCCTCCGATCATCAAGGCGTGCGAGATCATTGGCGGAGGCACCCAAATGGGTCCAGGCTCCGTTTTCCACGTCACTTACATCCTCCCTGGGATGAC TGAAGTGGTGAGTGCCAAGGGACTGTTGGGAGATGTAGACGAAGTAGGAGGGAAGTACTTGTCATTCACGGTGATCGAAGGGGAGATGTTACAGAAGTAT CCTACTTTCATCTCAAGTGCTACGATCGTCGGCAACGAGGTTACCTGGACTCTCGAGTACGAGAAGACGGATTCGAGCACCCTTCCTCCTCTCGAATATG TTCCTCTATATACGCTCCTCACCCAAGCCTTCGACAACTTCAATTGCTGA
AA sequence Show only first row Show all	>Lus10039891 pacid=23165106 polypeptide=Lus10039891 locus=Lus10039891.g ID=Lus10039891.BGIv1.0 annot-version=v1.0 MAAQTHKLEVEVTMKSPEKLVSFYRNHVLETPKLAPPIIKACEIIGGGTQMGPGSVFHVTYILPGMTEVVSAKGLLGDVDEVGGKYLSFTVIEGEMLQKY PTFISSATIVGNEVTWTLEYEKTDSSTLPPLEYVPLYTLLTQAFDNFNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	0	1
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	1.7	0.9859
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	2.4	0.9851
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	4.2	0.9818
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	4.5	0.9661
AT5G39790			5'-AMP-activated protein kinas...		Lus10028512 [exp]	4.5	0.9400
					Lus10041636 [exp]	4.6	0.9637
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	6.3	0.9634
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	6.6	0.9565
					Lus10008816 [exp]	7.7	0.9659
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	7.7	0.9650

Compare expression of checked genes

Lus10039891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.