Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06290 1035 / 0 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 1008 / 0 ACX6 acyl-CoA oxidase 6 (.1) AT5G65110 358 / 5e-114 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT4G16760 235 / 5e-68 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 234 / 2e-67 ACX5 acyl-CoA oxidase 5 (.1) AT3G06690 216 / 4e-66 acyl-CoA oxidases;oxidoreductases, acting on the CH-CH group of donors;FAD binding;oxidoreductases;acyl-CoA oxidases (.1) AT3G45300 43 / 0.0005 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016249 [exp] 1148 / 0 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10002177 [exp] 982 / 0 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10041711 [exp] 342 / 1e-107 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10024038 [exp] 278 / 7e-84 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10007815 [exp] 230 / 2e-66 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 229 / 1e-65 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 229 / 2e-65 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 227 / 8e-65 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10027811 [exp] 60 / 4e-09 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123500 [exp] 1110 / 0 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 1109 / 0 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.005G077600 [exp] 358 / 4e-114 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.007G090400 [exp] 355 / 7e-113 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.001G155500 [exp] 223 / 1e-63 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.003G079200 [exp] 222 / 3e-63 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039894 pacid=23165175 polypeptide=Lus10039894 locus=Lus10039894.g ID=Lus10039894.BGIv1.0 annot-version=v1.0 ATGTCAACGGAATCGTCCTCGGACCGGGCATCCCGCCGGACTCGGATTCTTTCCAATCACCTCACCGGCTCCGCCCCTCAGGCGACCGGTGGTTCTCTCC AGTCAAACGTTTGCTTGAGCTACTCCCCTCCGGAGCTCCATGAGAAGATTGAATTCGATGCCAGGAAGATGCGGGAGCTACTTGACGTGCACAACATCCA GGATCGGGACTGGCTGTTCGGGCTGATGATGCAGAGCAAGCTGTTCAATCCGCAGGAGAAAGGAGGGAGGGTGTTCGTGATGCCGGATTTCAACCAGACC AAGGAGCAGCAGCGGGAGATGACGATGAAGCGGATCGAGTATCTGCTTGAGCGGGGAGTTTTCGATGGATGGCTTACGAGTAGAGGACCGGAGACGGAGA TGAGGAAGTTCGCGTTCATGGAAACTCTCGGCATTTTTGACCAGTCGCTCGCGATTAAGATTGGTGTTCACTTCTTTTTGTGGGGAGGTGCCGTTCAATT CTTTGGTACAAAGCGTCACCATGACAAGTGGCTGAGGGACACTGAAACTTACAGAATCAAGGGCTGCTTTGCCATGACTGAATTAGGACATGGAAGTAAT GTTCGAGGAATTGAAACAGTTGCAACCTACGATTCCAACACAAATGAGTTTGTCATCACTACTCCTTGTGAATCCGCTCAGAAGTACTGGATTGGTGGGG CTGCTAATCATGCAACGCACACAATAGTGTTCTCGCAGCTCAATATAAATGGAAGAAACCAAGGAGTCCATGCATTTATAGTGCAGATCAGGGATGCAGA AGGAAATGTATGTCCGAACATCCGCATTGCAGATTGTGGTCATAAAATTGGTCTGAATGGTGTTGACAATGGTCGAATCTGGTTTGACAGTGTTCGAATT CCAAGAGAAAACCTGTTGAATTCTGTAGCCGATGTCACCCCCGATGGACAGTATAAGAGTGCAATAGAAGACCCTGATCAGAGATTTGCAGCTTTCCTGG CCCCTCTCACGTCTGGTCGTGTAACTATTTCCATCTCTGCAATTTACTCGGCACAGATTGGTTTAGCAATTGCCACCAGATTTGCACTTAGTCGGCGGGC TTTCTCGTTTACACCTGATGCACCAGAAGAAGTCCTGTTGCTTGACTACCCAAGTCATCAGAGGCGACTCTTGCCGCTTATTGCCAAGACATATGCCATG ACCTGTGCTGGGAATTACTTGAAGAAGATATACGTGAAGAGGACACCTGCATCAAATAAAATCATTCATGTTGTTTCAAGTGGATTCAAGGCTGTGTTGA CCTGGCATAATATGAGAACACTACAAGAATGCCGTGAAGCCTGTGGCGGACAAGGGCTGAAGACTGATAATCAAGTTGGTCATCTGAAGGGTGAATATGA TGTCCAGTCCACTTTCGAGGGCGATAATAATGTTCTCATGCAGCAGGTAAGCAAAGCGCTTCTTGCGGAATATATAGCTGCTACGAAAAGGAACAAGCCT TTCAAGGGTCTCGGTTTGGAGCATATGAACGAACCTGGGCCGGTCATTCCATCCCAACTCACAAGCAATACCCTCAGAAGCAGTCAATTCCAGATTATTG CCCTCCGCTTGAGAGAAAGAGACCTCTTGAATCGTTTCGCTAAAGAGATGTCGCAACACCAGTCAAATGGAGTGAATAAAGACTACGCCTTTGCACTGGG CTATCAACTCGCAGAAGACTTGGGGAGGGCTTTCTCCGACAGAATTATATTCGAAACCTTCCTCGAGGTTGAGGATACAGTGTCCATCGGTCCATTAAAG GATGTGCTGGGTCAATTGAGATCATTGTACGCATTGACCTGCATGGAAGAAGATGCAGCATTCCTCCGATACGGCTACTTATCAACCGAGAACGCAGCTT CCGTTAGAACAGAAGTGGCGAAGCTTTGCAGCGAGCTGAGACCGCATGCGCTTGGCTTGGTCAGCTCCTTCGGCATTCCCAGTGCTTATCTCAGCCCCAT TGCTTTCAACTGGATCGATGCGAATTCTTGGTCTTCTTCCTCATAG
AA sequence Show only first row Show all	>Lus10039894 pacid=23165175 polypeptide=Lus10039894 locus=Lus10039894.g ID=Lus10039894.BGIv1.0 annot-version=v1.0 MSTESSSDRASRRTRILSNHLTGSAPQATGGSLQSNVCLSYSPPELHEKIEFDARKMRELLDVHNIQDRDWLFGLMMQSKLFNPQEKGGRVFVMPDFNQT KEQQREMTMKRIEYLLERGVFDGWLTSRGPETEMRKFAFMETLGIFDQSLAIKIGVHFFLWGGAVQFFGTKRHHDKWLRDTETYRIKGCFAMTELGHGSN VRGIETVATYDSNTNEFVITTPCESAQKYWIGGAANHATHTIVFSQLNINGRNQGVHAFIVQIRDAEGNVCPNIRIADCGHKIGLNGVDNGRIWFDSVRI PRENLLNSVADVTPDGQYKSAIEDPDQRFAAFLAPLTSGRVTISISAIYSAQIGLAIATRFALSRRAFSFTPDAPEEVLLLDYPSHQRRLLPLIAKTYAM TCAGNYLKKIYVKRTPASNKIIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTDNQVGHLKGEYDVQSTFEGDNNVLMQQVSKALLAEYIAATKRNKP FKGLGLEHMNEPGPVIPSQLTSNTLRSSQFQIIALRLRERDLLNRFAKEMSQHQSNGVNKDYAFALGYQLAEDLGRAFSDRIIFETFLEVEDTVSIGPLK DVLGQLRSLYALTCMEEDAAFLRYGYLSTENAASVRTEVAKLCSELRPHALGLVSSFGIPSAYLSPIAFNWIDANSWSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10039894 [exp]	0	1
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	25.9	0.8448
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024354 [exp]	42.4	0.8574
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	54.7	0.8408
AT3G62220			Protein kinase superfamily pro...		Lus10038042 [exp]	62.3	0.8163
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	69.0	0.8426
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10013774 [exp]	96.8	0.8251
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	101.2	0.8336
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	105.6	0.8163
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10036744 [exp]	106.4	0.8170
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	118.5	0.8222

Compare expression of checked genes

Lus10039894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.