Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60860 397 / 5e-143 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 380 / 2e-136 AtRABA1g RAB GTPase homolog A1G (.1) AT1G28550 366 / 1e-130 AtRABA1i RAB GTPase homolog A1I (.1) AT4G18430 360 / 3e-128 AtRABA1e RAB GTPase homolog A1E (.1) AT2G33870 359 / 5e-128 ArRABA1h RAB GTPase homolog A1H (.1) AT4G18800 337 / 4e-119 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G45750 330 / 1e-116 AtRABA1c RAB GTPase homolog A1C (.1) AT1G16920 315 / 1e-110 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G06400 313 / 1e-109 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G09630 281 / 4e-97 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017679 [exp] 412 / 7e-149 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 412 / 9e-149 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10015297 [exp] 396 / 2e-142 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 390 / 3e-140 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 381 / 1e-136 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10029253 [exp] 332 / 6e-117 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 328 / 9e-116 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10020746 [exp] 305 / 1e-106 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029789 [exp] 305 / 2e-106 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123600 [exp] 402 / 4e-145 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 401 / 1e-144 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.001G374000 [exp] 385 / 3e-138 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.011G061300 [exp] 384 / 1e-137 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.011G070300 [exp] 333 / 2e-117 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 331 / 1e-116 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.003G004100 [exp] 281 / 5e-97 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 274 / 2e-94 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G061300 [exp] 271 / 4e-93 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 268 / 4e-92 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10039895 pacid=23165179 polypeptide=Lus10039895 locus=Lus10039895.g ID=Lus10039895.BGIv1.0 annot-version=v1.0 ATGGGAGCTTACAGGGCCGACGACGACTACGACTACTTGTTCAAGGTCGTCTTGATAGGCGACTCCGGCGTCGGGAAATCCAATCTCCTGTCCAGATTCA CCAGGAACGAGTTCAGCCTCGAGTCCAAATCCACAATCGGCGTTGAATTCGCCACCCGCAGCATCCACGTCGATGACAAGGTCGTCAAAGCCCAGATTTG GGACACTGCTGGACAAGAAAGAGGTGCAGTCGGTGCTTTGCTCGTCTACGATGTCACTCGGCACGTCACATTTGAAAACGTGGAGAGGTGGTTAAAAGAG CTCCGCGACCACACTGATGCCAACATTGTGATCATGCTTGTCGGAAACAAGGCCGATCTTCGACACCTCCGTGCTGTTCAGACTGAGGACTCCAAGGCAT TTGCAGAGAGGGAGAACACTTTCTTCATGGAAACTTCCGCCCTCGAATCCTTGAATGTCGAGAACGCCTTTACTGAGGTGCTCACCCAGATATACCGGGT CGTCAGCCGGAAAGCCCTCGATGTCGGAGACGACCCTGCAGCCTTGCCCAAAGGACAGACTATTAACGTCGGCAAGGATGATGTATCAGCTGTTAAGAAA GTCGGGTGCTGCTCTGCATAG
AA sequence Show only first row Show all	>Lus10039895 pacid=23165179 polypeptide=Lus10039895 locus=Lus10039895.g ID=Lus10039895.BGIv1.0 annot-version=v1.0 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQIWDTAGQERGAVGALLVYDVTRHVTFENVERWLKE LRDHTDANIVIMLVGNKADLRHLRAVQTEDSKAFAERENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINVGKDDVSAVKK VGCCSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	0	1
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	2.4	0.9035
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	3.6	0.8590
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	4.0	0.8560
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	4.0	0.8825
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	5.7	0.8628
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	6.3	0.8644
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	6.6	0.8448
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	6.7	0.8696
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	8.1	0.8816
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	8.5	0.8755

Compare expression of checked genes

Lus10039895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.