Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31060 932 / 0 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 382 / 4e-124 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 129 / 3e-31 Small GTP-binding protein (.1) AT5G39900 113 / 6e-26 Small GTP-binding protein (.1) AT3G22980 100 / 8e-22 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT4G20360 92 / 1e-19 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT1G45332 91 / 1e-18 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 91 / 1e-18 Translation elongation factor EFG/EF2 protein (.1) AT4G02930 89 / 2e-18 GTP binding Elongation factor Tu family protein (.1) AT1G56070 87 / 2e-17 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002179 [exp] 1090 / 0 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10007535 [exp] 378 / 2e-122 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10012200 [exp] 332 / 2e-102 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10035968 [exp] 135 / 5e-33 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 116 / 6e-27 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 113 / 8e-26 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 107 / 5e-24 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10027995 [exp] 92 / 3e-19 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 92 / 4e-19 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123700 [exp] 972 / 0 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 374 / 5e-121 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 127 / 1e-30 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.014G138100 [exp] 97 / 4e-21 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.017G079800 [exp] 96 / 2e-20 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.009G152500 [exp] 95 / 5e-20 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.002G215900 [exp] 93 / 7e-20 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.003G109900 [exp] 91 / 6e-19 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 91 / 1e-18 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G121600 [exp] 89 / 2e-18 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Lus10039896 pacid=23165289 polypeptide=Lus10039896 locus=Lus10039896.g ID=Lus10039896.BGIv1.0 annot-version=v1.0 ATGGCGGGTCCTCTGCTTCGTTCCATCTGGTCATCCGCCAAAAACTCAATTTCATCATCCTCCTCCTCCTCTTCTCCCCGATCCTTCATCAAACCCTACA TCTCCTCCCGATTAGCTCCTCTGCTTTCCCGCCATCCCGGTGCCGCCGCCGCCAGAGCTTTCTCCGCTGCCCCTTTAGCCGCCACACCATCATCATCGCC CACGGCTCCCAATTCGGGATTGGATCCCAGCAGACTTAGGAACGTGGCAGTAATTGCTCATGTCGATCACGGGAAGACTACACTCATGGACCGTCTGCTC AGGCAATGCGGAGCTGATATCCCTCACGAGCGTGCCATGGATTCAATCAGTCTTGAGCGAGAGCGGGGCATTACTATTGCATCCAAGGTTACGGCTATTA CGTGGAAGGAGAATGAGCTGAACATGGTTGATACACCTGGACATGCAGACTTCGGCGGTGAAGTTGAACTGGTTGTTGGAATGGTTGAAGGAGCAATTTT GGTTGTAGATGCTGGTGAGGGTCCACTTGCACAGACAAAGTTTGTTCTCGCCAAAGCATTAAAGTATGGGTTGAGACCTCTCTTACTTCTCAACAAGGTA GATAGACCTTCAGAGGAGCAACTGGACTTCCCTGTTCTCTATGCTTCTGCAAAAGAAGGATGGGCATCCTCCACCTTCACCAAGGATCCTCCTGCCGAAT CAAGAAATATGTCAGATCTGCTTGACGCAATCATTAGACATGTTCCTTCACCAAACGCGAGGATTGACGAACCTTTCCAGATGCTGGTTTCAATGATGGA AAAAGACTTCTATCTTGGTCGCATTTTAACCGGACGCATATCCTCTGGGACTATTCATATTGGAGACAGAGTGCATGGGCTTCGTTCTACAGAGTCTGGG GTGGAAAAGATTGAAGAAGGAAAGGTTGTCAAGCTCATGAAGAAGAAAGGTACAAGCATGGTTCTCATTGACAGTGCTGGAGCTGGTGATATCATATCAA TGGCTGGGATGGGTAAACCATCAATAGGACACACAGTAGCAAATCTGGAGGTGACAACTCCTTTACCGGGGGTTGAACTGGATCCTCCGACCATTTCCAT GACTTTTAGTGTCAATGATTCTCCGTTGGCTGGCCGGGATGAAGGTTCACAGTATGAAGTGCAAGGAAGAGGAGAACTTCAACTGGGCATTTTGATTGAG AATATGAGGCGTGAAGGATTTGAGTTATCGGTGTCACCTCCGAGAGTCATGTATAAAAATGAAAAGGGCCAGAAGTTGGAGCCAATTGAAGAAGTAACAA TTGAGGTAAATGATGAACACGTGGGTTTAGCCATGGAAGCTCTATCCCACAGGAGAGCTGAAGTTGTCGATATGGGCCCTGTCCCTGGGAATGTTGGCAG GACTAGGTTGTCGTTAACATGTCCTTCAAGGGGTCTGGTTGGTTACAGGAGTGTGTTCAGCAGCGACACTCGTGGAACTGGATTCATGCATCGTGCCTTC CTCACGTATGAAAAATTCCGTGGTCCACTAGGAAATGTCAGAAAGGGAGTCTTGGTGTCTATGGGATTTGGTACAATCACAGCTTATGCATTGGTTGGTT TGGAACCTCGTGGGATACTGTTCGTTGGCCCTGGAGCGGAGACGTATGATGGCATGATTGTGGGTGAACATACGCGAGATTCGGATCTCGATGTCAATCC AGTAAGGGCTAAGGAACTGAGCAATATGCGATCAGCCAATAAGGATGAAAATGTCAGACTATCTCCGGCTCGACTGATGACCCTTGAAGAAGCCATAGGT TACGTAGCGTCTGATGAGCTTATTGAGGTTACTCCGAAAGCTATTAGGTTGAGGAAGAGATACCTGGAGGTTAACAAACGGAAAACAATGAGCAAGAGGC CAAAGGAATGA
AA sequence Show only first row Show all	>Lus10039896 pacid=23165289 polypeptide=Lus10039896 locus=Lus10039896.g ID=Lus10039896.BGIv1.0 annot-version=v1.0 MAGPLLRSIWSSAKNSISSSSSSSSPRSFIKPYISSRLAPLLSRHPGAAAARAFSAAPLAATPSSSPTAPNSGLDPSRLRNVAVIAHVDHGKTTLMDRLL RQCGADIPHERAMDSISLERERGITIASKVTAITWKENELNMVDTPGHADFGGEVELVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPLLLLNKV DRPSEEQLDFPVLYASAKEGWASSTFTKDPPAESRNMSDLLDAIIRHVPSPNARIDEPFQMLVSMMEKDFYLGRILTGRISSGTIHIGDRVHGLRSTESG VEKIEEGKVVKLMKKKGTSMVLIDSAGAGDIISMAGMGKPSIGHTVANLEVTTPLPGVELDPPTISMTFSVNDSPLAGRDEGSQYEVQGRGELQLGILIE NMRREGFELSVSPPRVMYKNEKGQKLEPIEEVTIEVNDEHVGLAMEALSHRRAEVVDMGPVPGNVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAF LTYEKFRGPLGNVRKGVLVSMGFGTITAYALVGLEPRGILFVGPGAETYDGMIVGEHTRDSDLDVNPVRAKELSNMRSANKDENVRLSPARLMTLEEAIG YVASDELIEVTPKAIRLRKRYLEVNKRKTMSKRPKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	0	1
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	1.0	0.9363
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	2.8	0.8759
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	3.5	0.8672
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	6.6	0.8617
AT5G23300		PYRD	pyrimidine d (.1)		Lus10041623 [exp]	7.2	0.7834
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10033332 [exp]	8.4	0.8299
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	11.4	0.8550
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	12.7	0.8339
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	14.0	0.8103
AT4G11160			Translation initiation factor ...		Lus10033933 [exp]	15.5	0.8171

Compare expression of checked genes

Lus10039896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.