Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66130 213 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09670 177 / 7e-54 Oxidoreductase family protein (.1) AT1G34200 151 / 5e-44 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002180 [exp] 308 / 4e-106 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013633 [exp] 185 / 7e-57 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1) Lus10001327 [exp] 178 / 2e-54 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1) Lus10005674 [exp] 164 / 1e-48 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137300 [exp] 252 / 3e-83 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G200200 [exp] 206 / 3e-65 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1) Potri.005G200300 [exp] 204 / 2e-64 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039898 pacid=23165088 polypeptide=Lus10039898 locus=Lus10039898.g ID=Lus10039898.BGIv1.0 annot-version=v1.0 ATGGACACCACGATGTGGCTGCATCATCCGAGAACGAAGAAGATGTACGAGTTCATCTCCGATTCGAAGCTCGTCGGGAAAATTGGACTGATCCACACTA CTTCAACGGCATACATCCCGCGCCAATTCTTCGAGACAGTAATTCCAGGAAGAGCAGCCATGGATCCCTTAGGGGCATTAGGTGAATTAGGATGGTATGG CATCGGAGCAGTTCTCTGGGCGAAAGATTTCAATCTCCCAAGTTCAGTCACAGCTTTACCGGACATCACAAGGAGCTCCACCGGAATCATTCTCTCCTGC TCGGCGCAGCTTCATTACGAAGATGAAGACAACACATTGGCGATGGTACACTGCTCTTTCCTCTCTCACATAACCATGGATCTCGAGATCGTCGGCACCA ACGGCTCTCTGTATATGGGGGATTTCCTCCTTCCTTACAGTGAAGAATCTGCAGAGTTCAACTTCACTTGGATGGCCAAGTTCGTCGACCGGGATTTGGG TTGGAACGTGAAGCCTCGTCGAGTTGAGGTTTCGAGTGAAGCTTCACAGGAGGTTTTCATGGTTCAGGAATTTGCCAGGCTTGTTCTTCATGAGCCCTCT GCTTCTTCTGGGAAGAAGTGGGTTGAGATTTGCAGGAAGACTCAGCTGGTTATGGATTCTGTTGTCAAATCCATTCAACTTGGTTGCAAATGTGTAGCTC TTTGA
AA sequence Show only first row Show all	>Lus10039898 pacid=23165088 polypeptide=Lus10039898 locus=Lus10039898.g ID=Lus10039898.BGIv1.0 annot-version=v1.0 MDTTMWLHHPRTKKMYEFISDSKLVGKIGLIHTTSTAYIPRQFFETVIPGRAAMDPLGALGELGWYGIGAVLWAKDFNLPSSVTALPDITRSSTGIILSC SAQLHYEDEDNTLAMVHCSFLSHITMDLEIVGTNGSLYMGDFLLPYSEESAEFNFTWMAKFVDRDLGWNVKPRRVEVSSEASQEVFMVQEFARLVLHEPS ASSGKKWVEICRKTQLVMDSVVKSIQLGCKCVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	1.4	0.9400
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	1.4	0.9300
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	3.7	0.9035
AT1G16080			unknown protein		Lus10024094 [exp]	3.9	0.9210
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	4.0	0.9209
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	4.2	0.9049
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	4.5	0.8819
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	5.3	0.8747
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	6.3	0.9083
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	7.2	0.8787

Compare expression of checked genes

Lus10039898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.