Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35020 325 / 1e-114 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT1G20090 323 / 2e-114 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT3G51300 322 / 6e-114 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT1G75840 320 / 4e-113 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT2G17800 320 / 8e-113 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT5G45970 320 / 1e-112 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT4G35950 317 / 8e-112 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT3G48040 307 / 8e-108 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT5G62880 305 / 8e-107 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT2G44690 303 / 5e-106 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002181 [exp] 375 / 1e-134 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 324 / 2e-114 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 323 / 7e-114 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10033131 [exp] 322 / 2e-113 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 317 / 2e-111 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 313 / 8e-110 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10019786 [exp] 312 / 1e-109 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 308 / 8e-108 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10034876 [exp] 308 / 1e-107 AT3G48040 356 / 2e-126 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123800 [exp] 335 / 1e-118 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.009G134600 [exp] 330 / 1e-116 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 328 / 6e-116 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.019G092300 [exp] 327 / 1e-115 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 325 / 9e-115 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.005G242000 [exp] 323 / 4e-114 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G110700 [exp] 321 / 3e-113 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 321 / 3e-113 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.002G019500 [exp] 320 / 8e-113 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.015G073000 [exp] 319 / 3e-112 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10039899 pacid=23164991 polypeptide=Lus10039899 locus=Lus10039899.g ID=Lus10039899.BGIv1.0 annot-version=v1.0 ATGAGTACACCTAGCAGGTTCATCAAGTGTGTGACTGTTGGAGATGGAGCTGTTGGGAAGACATGCATGCTCATCTCCTACACTAGCAACACTTTCCCAA CTGATTATGTTCCGACGGTGTTTGACAACTTCAGTGCGAATGTGACGGTGGACGGGAGCACGGTGAGCCTGGGATTATGGGACACAGCAGGACAAGAGGA TTACAACAGGTTGAGGCCATTGAGTTACAGAGGTGCTGATGTCTTCTTGCTGGCTTTCTCCCTCATCAGCCGGCCTAGCTTTGAGAACATCTCCAAAAAG TGGATCAATGAGCTGAGGCATTATGCTCCAACCATCCCAATTGTGCTCGCTGGAACCAAACTTGACTTGAGAGATGATAAGCAGTACTTGAGTGATCATC CTGGGGCCATTCGAATCACAACTGCACAGGGAGAAGAACTGAAGAAGAAGATAGGTGCTGCAGTGTACATTGAGTGCAGCTCCAAGACTCAGCATAACGT GAAAGCAGTGTTTGATGCTGCAATCAAGGTTGTTCTTCAGCCTACCAAACAAAAGAAGAAGAGACTCAAGAACAATCGTCTCTGCTCCATTCTTTAA
AA sequence Show only first row Show all	>Lus10039899 pacid=23164991 polypeptide=Lus10039899 locus=Lus10039899.g ID=Lus10039899.BGIv1.0 annot-version=v1.0 MSTPSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVTVDGSTVSLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRPSFENISKK WINELRHYAPTIPIVLAGTKLDLRDDKQYLSDHPGAIRITTAQGEELKKKIGAAVYIECSSKTQHNVKAVFDAAIKVVLQPTKQKKKRLKNNRLCSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	0	1
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	1.4	0.9826
					Lus10026494 [exp]	1.4	0.9741
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	2.4	0.9719
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	3.5	0.9691
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	4.2	0.9664
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	5.9	0.9685
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	7.5	0.9549
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	9.5	0.9516
					Lus10024940 [exp]	10.6	0.9359
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	11.6	0.9473

Compare expression of checked genes

Lus10039899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.