Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55490 551 / 0 GEX1, ATGEX1 gamete expressed protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002182 [exp] 1068 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Lus10029726 [exp] 1002 / 0 AT5G55490 572 / 0.0 gamete expressed protein 1 (.1) Lus10042450 [exp] 820 / 0 AT5G55490 541 / 0.0 gamete expressed protein 1 (.1) Lus10026220 [exp] 230 / 3e-70 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10001735 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137100 [exp] 735 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039900 pacid=23165041 polypeptide=Lus10039900 locus=Lus10039900.g ID=Lus10039900.BGIv1.0 annot-version=v1.0 ATGTCTCATCAGTATGAACATCATCTTTTGTTGACACTCCTTGTTTTGATCATATCAACTTCCGGTTGCCAGTCATGGGGATGGTTCTCTTCTTCTGCTT CCGGCGATGATTCTGGTTATCCTTCCGGTGATGAATACCATTTTTCTGGGGTTTCGGTGGCCCAGTTTTCATTGGATTTCCCTGCAGATCATAAGGGAAT AGTAGAGAAAGCAAGGAACAAACTAGTTGGTTCCAACACTTGCTGGCAGAACGCTTACCACCATATATTTTCCGGATGCACTCAAATCAACGCCAACGAA GACAAACGCAAGAGATTCGCTTGGCATCTCAGTGATTGCTTCCAGAAAGATTCCGGGAGGCGGCCTTTCCCTAACTGCGATGAGAAATCGGCCATGTATC ATTGCCTGAAGAAGTTGGATGATCACGAACACAAGGTTTATCTCGAGTTTTTCACCGAAACAAATTCCATCTGCTACCAACTACAGGTACACGCGTTCAA ACGTGAGACGGAGAGGCTGGTGAATGAGCTTAGAAGTTCAGCGCAATACACGGAGGAACAACTGGAGACTATAAAGGACAGAACGGTCACATTACTGCAG AACTCGATTCAGATTCACGATTCGTTGAGTTCGGTGGATGATAAAGTTAAGCACGTGATTCAGACGAGTAAAGAAGTGGAGGATCAGATTCATACTTTGT CAAAGCAGTCGGAAGTGGTTTATAAACAATCGGAGGATATCGTGAGGTCACAGACAGAACTGCAAACGCGACAAGAAAAGATGAATGAGAATTTGATAGA AGGGGTGACGATGCTTCAAGATGCTTACAGTAATTTGGGGGAGGAAGTGAGCAACCTGAGGAATGAAGCTGTAGAGATAGAGAAGCAGATTGACAGAGTT GGCGAATCGATGTCAACAAGGTTTCGGAATCTGCAATCAAAAGCTGATGATATCGAGAACATGGCGGGGAGTTCGTTGAGCAAGCAACAAGAGCTTCTAG ATGGACAGTCCATGGCGCTTAAAGGCCTCGAAAGCCTGACGGAATCTCAATCTGTAGCACTGCAAGAAAGCAGAAATGCAATGCAACATTTGGCTGATTT GGGTCGTCAACAGCAGGAAGAGCTTCTTCAAAGGCAGAAACAGCTTCAGCAAGTTCATGATCACTTAGTTTCGAATTCAAAATCGATATTGGAAGCACAG GAAGCATTTCAAGCGAAGCAAGCTAGCATGTTTATTGCTCTAGACAAGCTGTTTGCACTACACAATGCAATGTTGCTCGAATCTCGAGTAATCAAGGCTT TCTTCATCTACACCATGTCAATTTTCATCATCTACATGTTTACCAGCACAAAGCAGACATATCCAGTCAGAGCCAATCTCTATCTCGGGTTGTGTACTAC ATTCCTCGTGGAGGTAGCAATGATTCGTCTTACACCAAGTGATCTAGAGCGACAGACCTGGATAATTAATCTGGCAAGGTTTCTCTTTGCATTCCTGACG ATTCTTCAGATCCTTTATGCCATTTACACATACAGGGACTATGAAGTATTGAATCATCACATGATCCTGACATTGACGGAGAAAGTAAATTCGATGCAAA GAAGCAAAGAGATTTCATGGGAAAGCGATAGTGAAGTGGACTGGTCGACATGGGTTGAAGACGAGTTACCTGAAGAAGTCGCCGGTTCGGAGGATCCTGA CTATATGATTCCAGAAGAAGCGGCTGAGAGATCGATTGTGAATGTTCCTGTGACAAGAAAGTACGATCTTCGTCAACGAAACCGTTTCAGCTGA
AA sequence Show only first row Show all	>Lus10039900 pacid=23165041 polypeptide=Lus10039900 locus=Lus10039900.g ID=Lus10039900.BGIv1.0 annot-version=v1.0 MSHQYEHHLLLTLLVLIISTSGCQSWGWFSSSASGDDSGYPSGDEYHFSGVSVAQFSLDFPADHKGIVEKARNKLVGSNTCWQNAYHHIFSGCTQINANE DKRKRFAWHLSDCFQKDSGRRPFPNCDEKSAMYHCLKKLDDHEHKVYLEFFTETNSICYQLQVHAFKRETERLVNELRSSAQYTEEQLETIKDRTVTLLQ NSIQIHDSLSSVDDKVKHVIQTSKEVEDQIHTLSKQSEVVYKQSEDIVRSQTELQTRQEKMNENLIEGVTMLQDAYSNLGEEVSNLRNEAVEIEKQIDRV GESMSTRFRNLQSKADDIENMAGSSLSKQQELLDGQSMALKGLESLTESQSVALQESRNAMQHLADLGRQQQEELLQRQKQLQQVHDHLVSNSKSILEAQ EAFQAKQASMFIALDKLFALHNAMLLESRVIKAFFIYTMSIFIIYMFTSTKQTYPVRANLYLGLCTTFLVEVAMIRLTPSDLERQTWIINLARFLFAFLT ILQILYAIYTYRDYEVLNHHMILTLTEKVNSMQRSKEISWESDSEVDWSTWVEDELPEEVAGSEDPDYMIPEEAAERSIVNVPVTRKYDLRQRNRFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10039900 [exp]	0	1
AT5G43150			unknown protein		Lus10004910 [exp]	3.9	0.8596
					Lus10034961 [exp]	4.9	0.8214
AT5G43150			unknown protein		Lus10010543 [exp]	4.9	0.8515
					Lus10009357 [exp]	6.0	0.8166
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	6.9	0.8313
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	8.7	0.8211
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	13.0	0.8030
					Lus10025700 [exp]	14.1	0.7966
					Lus10011661 [exp]	14.2	0.8099
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10021910 [exp]	19.8	0.7521

Compare expression of checked genes

Lus10039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.