Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06260 325 / 7e-109 Cysteine proteinases superfamily protein (.1) AT5G45890 288 / 2e-94 SAG12 senescence-associated gene 12 (.1) AT3G48340 286 / 2e-93 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G43060 278 / 4e-89 Granulin repeat cysteine protease family protein (.1) AT1G47128 274 / 1e-87 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G50260 268 / 2e-86 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G35350 264 / 8e-85 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G19390 259 / 7e-82 Granulin repeat cysteine protease family protein (.1) AT4G36880 256 / 1e-81 CP1 cysteine proteinase1 (.1) AT1G09850 256 / 1e-80 XBCP3 xylem bark cysteine peptidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002184 [exp] 546 / 0 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) Lus10017674 [exp] 330 / 8e-111 AT1G06260 310 / 2e-104 Cysteine proteinases superfamily protein (.1) Lus10020723 [exp] 310 / 5e-103 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10032406 [exp] 308 / 3e-102 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 308 / 4e-102 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10028501 [exp] 306 / 2e-101 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 303 / 2e-100 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10002301 [exp] 303 / 4e-100 AT5G45890 397 / 1e-138 senescence-associated gene 12 (.1) Lus10015285 [exp] 300 / 2e-99 AT5G45890 406 / 8e-143 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089100 [exp] 308 / 2e-102 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 309 / 3e-102 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 307 / 8e-102 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 307 / 8e-102 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 305 / 6e-101 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 304 / 1e-100 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.004G055900 [exp] 290 / 2e-95 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 288 / 8e-95 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 284 / 6e-93 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.014G024100 [exp] 288 / 7e-93 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10039901 pacid=23164993 polypeptide=Lus10039901 locus=Lus10039901.g ID=Lus10039901.BGIv1.0 annot-version=v1.0 ATGGTCAGCTATATCGCGATAGTTGCGAGCATCCTTTCTGTCCATGCCATGGCTAGCTCCAGCGATCTCGATCCGACGGCGATGGGGGAGAGGTACAACA AGTGGATGTCGATGCATGGACGAAAGTACAAGGACCGAAATGAATATTATCACCGGTTCCAGATATACCAGTCCAACGTTCATTACATCAACTACATCAA TTCTAAGAACCTGTCGTTTCAGCTCACTGACAACAAGTTCGCCGATCTCACCAACGACGAGTTCAAGGCGAGGTACCTCGGTCTTACCCTGCCAAAGTCG CTTCCTAAGCACAAGGAATGCACATGCGGAGGAGTGTCCAAAAAGTTGCCTGCTCAAGTCGATTGGAGGAAAAGTGGCGCCGTCACCAAAGTCAAAGATC AAGGCAATTGTGGAAGTTGTTGGGCGTTCTCTGCAGTGTCAGCAATCGAAAGTCTTAACAAAATCAAAACAGGAAAACTCCTGAGCCTATCGGAGCAACA GCTCGTCGATTGCGATGTGAACGGTGAAAACGAGGGATGCAACGGCGGGTTCATGAACGATGCATTCCAGTTCATCCGCAAGACTGGCGGGCTCACTACC GAGAAGAACTATCCTTACAAAGGAAGACACAGTGTTTGCGACAAAAAGAAGACAAAAAATCCCGCTGTAAAAATAACTGGTTACGTAGTCGTGCGTGCCA ACAACGAAACAGCCCTCCAAGCTGCCGTTGCGAAGCAACCTGTTTCTGTAGCAGTCGATGCCGGTAGTTACTCGTTCCAGTTTTACTCGAGTGGTGTGTT CACCGGTTCGTGCGGATCGAACCTCAACCATGGAGTTGTTGTGGTTGGATATGGGACGAAAGGTGGGAGGAAGTACTGGATCGTGAGGAATTCATGGGCG TCAGATTGGGGGGAAAAAAGCACTATGAGAACTTCAGCTTGTCCAGCTGCCAAATTTTACTGCAGGAATGTAGGAAGTACACCAAAGTTTATATACTCTT CTCAAGTTAACGACCAAGTTTGCGATTGCTGTGATGGAAGTGATGAATATGGCAGCGAATTCAACTGTCCGAACACATGCTTCATCGGTGGGAGCATGGA GTACAAGGCTGGAAGCTATCTGTCTTATCTTGATGCTAAAAGAAAGAACGATGCAAAAGCAAACGATTTGAAGAAGGCTAGTTTAGAGGAATTGCTGAAT AAAGTAACAGGGCTGAAGATGATAATTCTACTTCAAGCGTTACTTGTTGCTGCTGTGGTCATCTTCAAGATATTCAAGAGACGTGTTAAGTCTAAGAGAA GGCATCATCATCGTTAG
AA sequence Show only first row Show all	>Lus10039901 pacid=23164993 polypeptide=Lus10039901 locus=Lus10039901.g ID=Lus10039901.BGIv1.0 annot-version=v1.0 MVSYIAIVASILSVHAMASSSDLDPTAMGERYNKWMSMHGRKYKDRNEYYHRFQIYQSNVHYINYINSKNLSFQLTDNKFADLTNDEFKARYLGLTLPKS LPKHKECTCGGVSKKLPAQVDWRKSGAVTKVKDQGNCGSCWAFSAVSAIESLNKIKTGKLLSLSEQQLVDCDVNGENEGCNGGFMNDAFQFIRKTGGLTT EKNYPYKGRHSVCDKKKTKNPAVKITGYVVVRANNETALQAAVAKQPVSVAVDAGSYSFQFYSSGVFTGSCGSNLNHGVVVVGYGTKGGRKYWIVRNSWA SDWGEKSTMRTSACPAAKFYCRNVGSTPKFIYSSQVNDQVCDCCDGSDEYGSEFNCPNTCFIGGSMEYKAGSYLSYLDAKRKNDAKANDLKKASLEELLN KVTGLKMIILLQALLVAAVVIFKIFKRRVKSKRRHHHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	0	1
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	10.7	0.9611
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	18.6	0.9569
AT3G61830	ARF	ARF18	auxin response factor 18 (.1)		Lus10041340 [exp]	22.3	0.8639
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	23.7	0.9470
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	25.5	0.9379
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	28.1	0.9457
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	29.7	0.8810
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10024334 [exp]	31.8	0.8630
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	32.1	0.9440
					Lus10014857 [exp]	35.2	0.9440

Compare expression of checked genes

Lus10039901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.