Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58120 176 / 6e-54 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 174 / 3e-53 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G58110 94 / 2e-22 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT5G04840 79 / 3e-17 bZIP bZIP protein (.1) AT1G43700 78 / 1e-16 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G35490 74 / 2e-15 bZIP bZIP family transcription factor (.1) AT1G06070 75 / 3e-15 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 74 / 5e-15 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G06850 74 / 5e-15 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G40620 72 / 1e-14 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017656 [exp] 242 / 6e-80 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 239 / 1e-78 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10002185 [exp] 220 / 2e-71 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 79 / 8e-17 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 79 / 8e-17 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 78 / 2e-16 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10024204 [exp] 77 / 2e-16 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10028595 [exp] 77 / 3e-16 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018899 [exp] 77 / 3e-16 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091900 [exp] 179 / 4e-55 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 172 / 1e-52 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 173 / 2e-52 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G014800 [exp] 92 / 2e-21 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.004G219100 [exp] 88 / 5e-20 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.009G074900 [exp] 84 / 1e-19 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.015G147800 [exp] 84 / 1e-18 AT1G58110 153 / 4e-43 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.010G242800 [exp] 81 / 5e-18 AT5G04840 228 / 2e-73 bZIP protein (.1) Potri.019G130000 [exp] 80 / 4e-17 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G075000 [exp] 79 / 5e-17 AT2G42380 91 / 1e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10039902 pacid=23165310 polypeptide=Lus10039902 locus=Lus10039902.g ID=Lus10039902.BGIv1.0 annot-version=v1.0 ATGGCGCATTTGCCTCCCAAAATCCCAACAACCATGTTGCCGTCCTGGCCCGATTTCTCCTCCGACCACAAACTCATGCATTCCCCCTCAGCCGCCGTCC CGCCTCCTTCTTCCGCCGCCAACAACAACAAACCTTCGTGGGTTGATGAATTCCTCGACTTCTCCTCCTCCAGGCGCGGGAACCACCGGAGGTCCGTCAG TGACGGATCCGTCGCGTTTCTAGAGGTCCCAATGCTAGACGACGGCCACCACCACCGAGATTTCGAGAGATTCGCCGACGAGACGTTCACGTCAATAACA ATAGTAATAATTCCGACCGGATTGTGGACCCCAAGAGAAATTCTGGCGAATAGGCAATCGGCGCAACGATCTCGGGTGAGGAAGCTGCAGTACATATCGG AGCTTGAACGGAGCGTTACTTCTTTACAGGCGGAAGTATCGGTGTTATCGCCTAGAGTTGCATTCTTGGACCATCAAAGATTGCTTCTCAACGTAGATAA CAGTGCTTTGAAGCAACGGATCGCAGCTCTTGCTCAAGATAAGATGTTCAAAGATGCTCATCAAGAGGCGCTGAAGCGGGAAATAGAGAGATTGAGGGAA GTATACCACCAACAGCAGCAGAACCTCAAGAACATGGATTCTAATAACAACTCATCATCGTCATCAGGCCAAGCTAATGAACAACCCAACATAACAGCAG AAAAAGAGCAGCAGCAGCAGCTTCTCCAAGTCTAA
AA sequence Show only first row Show all	>Lus10039902 pacid=23165310 polypeptide=Lus10039902 locus=Lus10039902.g ID=Lus10039902.BGIv1.0 annot-version=v1.0 MAHLPPKIPTTMLPSWPDFSSDHKLMHSPSAAVPPPSSAANNNKPSWVDEFLDFSSSRRGNHRRSVSDGSVAFLEVPMLDDGHHHRDFERFADETFTSIT IVIIPTGLWTPREILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKMFKDAHQEALKREIERLRE VYHQQQQNLKNMDSNNNSSSSSGQANEQPNITAEKEQQQQLLQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	0	1
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	1.0	0.9886
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	2.0	0.9771
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	6.9	0.9482
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10013693 [exp]	7.4	0.9597
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	7.9	0.9535
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	13.0	0.9498
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	18.4	0.9521
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10031628 [exp]	19.0	0.9285
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10022851 [exp]	19.3	0.9279
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	20.0	0.9460

Compare expression of checked genes

Lus10039902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.