Plant FIBer expression Database

Lus10039903 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58110 202 / 5e-55 unknown protein
AT2G42370 194 / 2e-52 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002186
[exp]
863 / 0 AT3G58110 404 / 5e-131 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G119700
[exp]
406 / 3e-130 AT3G58110 388 / 5e-123 unknown protein
Potri.019G091700
[exp]
260 / 3e-75 AT3G58110 226 / 6e-63 unknown protein
PFAM info
Representative CDS sequence
>Lus10039903 pacid=23165220 polypeptide=Lus10039903 locus=Lus10039903.g ID=Lus10039903.BGIv1.0 annot-version=v1.0
ATGGCCTCTCCACTACCTTCTCCCACGCAAGATAAGCAGCCGACCAACAACTCTCCCACCCACGACGAACATCAAGCACCGACTACGGCGGAGCAATCTG
AAGAGCAACCGCCTGAGAAGGAGTCGCAAGAGAACCCACTACCTCTATCCGAGCCCTCTCAAACCCTAACCTTAAGTGTCTCCGAATCACTAGACAACGA
TCCTAATCAGAGCGATATGGAAGCCTCCCACCCAACAGCCTTCTCCGCCACATCCGCCTTCACCCGCCGCGGCGGCGGAAGTTTGAAGAGGAACAATAGC
AAGCGATTTGCAGCCGCTAAGATCAAGAAGCTTCAGAAGAAGCTCGAGACTCTCAACGAGAATCTCAACCCCATCCCTTTCAAGCCGGCCAGAGATCTGA
ACTTCGGTGCTCACGAGGAGCTTCTGAAGAGGCTGGGACTGTGGGACTTTGTCAATATCAAGTTCGACACCAATCTCCGTGCCGATCTCGTGTCGCAGCT
GATTGCCAGTTACGATCAGCAGCAGCGCGGTAGCTACGTCAATGAAGCTCGCATTAGGGTTAGCCGTGCTGACTTAGGCCGAGCTCTTAAATTTCCGGCG
AAGAAGGATAAGGTTTCGGCTTCGGAGGAGGAGGTGAAGAAAGAGAGTGAAGAAGAGATTGCGTTCGTCGGCGAATTGGTGTCGAATTGGATGCTGTTGC
ACGAGGATACGTGGATGATGCCGTCGGACATTCACAACTGGACGAAAACGATCAAAGAAGGGAGCTTGGAGAGAGTGGATTGGGCTGGGTTGATTTGGTC
AATGGTTGAGAAGGAACTTTCGGCTGCTCCCAACTTAGGTAACTGTTACTACGCCTCTCACTTGCAGTGTTTGATAAAATACCAGAAAGAAAACCTGTTG
AAGGAAGAGGAGTCTATACAAGTAGAGGAAGATATAGTAGAGGAAGATGTTGTAGAGGAAGTCGTGAAAACGAGTGAAGAGCTTCATGTGGTCACTGAGT
TGAAAGAGGACAGCATTGAATTGAGTTTGGGAGGGTTGGATAATGATTTGAAAGACAGTACTGTAGATGTAAGTGGCAAGGGGGAAGAAGATTTAGTCCA
AGAGAAGGATAAAGAAGTAGTAGAACAGGGGGAGGAGTGGTTCAAGACCAGTATGGATGAGAGTTTTCTGCAGCATTGTAGTGTTGCAAAAGCCGACGAC
TTGGAATGCGAAGAGGAGACGAAGCTTCAGCAAGAAGAGGAGCAAGAAGATGTTGCAATGAACGAAGAAGCGGAGGAAGAGCAAGGTGTTGAAATGGAGG
ATGTGGAAGAAATGGATTTCGACCGCTCTCCAAAAGAGGATGATGATATATTGAATGGTGTAGATTCCGAGAATCTTCTTGCGTCGATGGAGCTTAATGA
TAACCTCACATCGGGCGACTTTCTTGCAGCTAGGGTTGATATAGAGACTAATAACCACCATGGTAGCTCCTCACTTTATGGTAATGGAAACGGTTATAAG
AGGGATATAGGGCGGCTAGATGATGACGAAGATGGCGATATCCCTCATCATGCATTCGACAAGAGGATTCGGAGTGACGAGCAGCACCAGCAATATGGGG
TGGGGAAGGTGGTTGCTTCAGAGACCGAAGTGGACTACGAACAAATGCAGTATTTAATCAACAAAACTAGGGCGTCACATATGGAAAAGGACAGGGCTTT
ACAAGAGGCGAGCATGAATTACCAGCAGTTACTTAACGAAGTGCAGGCACGAGACGACATGATTCAGCACCTGCACAGGATCAGTTATGAGGAGCAACGG
AAGAAAGATATGGAAATCTGTAAGCTTGAGCGTGAACTACATATGATGGGGGATCTCTTGGAAGGGTATAGAAAGGCTCTGAAGGAGACACATAAATCCT
TTGCCGAGTACAGAGCGAAATGCCCCTTACCTGAAAAACCACTATACAAGGACTCTGGCCTTGGTGGTCTTGTTCTGACTGCTGCTGAAGTTGAGAAGTT
GAGAAAAGAGGAAGAGGAAAGGTTGAATCATTTGTGTATTGAGAAGAAAGTTAAAGAATTTGAGGAAGAATGGGTTGGCAAGTTTCAAGAACACGAGGAG
AGGATCGTATTACTGGGAGGAAGGTTGCTGGACACGGAGACGAGTTTCGATCTGTTGAAGGAAATGCACGTAAGCGTTCGGCCTGTTTGA
AA sequence
>Lus10039903 pacid=23165220 polypeptide=Lus10039903 locus=Lus10039903.g ID=Lus10039903.BGIv1.0 annot-version=v1.0
MASPLPSPTQDKQPTNNSPTHDEHQAPTTAEQSEEQPPEKESQENPLPLSEPSQTLTLSVSESLDNDPNQSDMEASHPTAFSATSAFTRRGGGSLKRNNS
KRFAAAKIKKLQKKLETLNENLNPIPFKPARDLNFGAHEELLKRLGLWDFVNIKFDTNLRADLVSQLIASYDQQQRGSYVNEARIRVSRADLGRALKFPA
KKDKVSASEEEVKKESEEEIAFVGELVSNWMLLHEDTWMMPSDIHNWTKTIKEGSLERVDWAGLIWSMVEKELSAAPNLGNCYYASHLQCLIKYQKENLL
KEEESIQVEEDIVEEDVVEEVVKTSEELHVVTELKEDSIELSLGGLDNDLKDSTVDVSGKGEEDLVQEKDKEVVEQGEEWFKTSMDESFLQHCSVAKADD
LECEEETKLQQEEEQEDVAMNEEAEEEQGVEMEDVEEMDFDRSPKEDDDILNGVDSENLLASMELNDNLTSGDFLAARVDIETNNHHGSSSLYGNGNGYK
RDIGRLDDDEDGDIPHHAFDKRIRSDEQHQQYGVGKVVASETEVDYEQMQYLINKTRASHMEKDRALQEASMNYQQLLNEVQARDDMIQHLHRISYEEQR
KKDMEICKLERELHMMGDLLEGYRKALKETHKSFAEYRAKCPLPEKPLYKDSGLGGLVLTAAEVEKLRKEEEERLNHLCIEKKVKEFEEEWVGKFQEHEE
RIVLLGGRLLDTETSFDLLKEMHVSVRPV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G58110 unknown protein Lus10039903
[exp]
0 1
AT3G58110 unknown protein Lus10002186
[exp]
1.0 0.8883
AT3G60850 unknown protein Lus10004021
[exp]
2.0 0.8208
AT3G26560 ATP-dependent RNA helicase, pu... Lus10036783
[exp]
2.4 0.7959
AT3G51850 CPK13 calcium-dependent protein kina... Lus10005038
[exp]
3.9 0.7672
AT3G17120 unknown protein Lus10010906
[exp]
6.9 0.7413
AT4G11560 bromo-adjacent homology (BAH) ... Lus10008527
[exp]
7.0 0.7652
AT5G18110 NCBP novel cap-binding protein (.1) Lus10020282
[exp]
9.2 0.7475
AT3G12480 CCAAT NF-YC11 "nuclear factor Y, subunit C11... Lus10026118
[exp]
9.7 0.7345
AT3G51850 CPK13 calcium-dependent protein kina... Lus10027808
[exp]
10.2 0.7481
AT5G64360 EIP9 EMF1-Interacting Protein 1, Ch... Lus10037698
[exp]
12.5 0.7662

Lus10039903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.