Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02050 535 / 0 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 495 / 1e-175 Chalcone and stilbene synthase family protein (.1) AT4G34850 449 / 1e-157 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT5G13930 226 / 2e-70 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002187 [exp] 664 / 0 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 458 / 4e-161 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 458 / 4e-161 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 240 / 1e-74 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 230 / 9e-72 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 222 / 2e-68 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 221 / 3e-68 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 161 / 4e-46 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 147 / 4e-42 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G056300 [exp] 570 / 0 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 568 / 0 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.004G167300 [exp] 458 / 4e-161 AT4G34850 637 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 456 / 3e-160 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 242 / 1e-76 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 239 / 1e-75 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 238 / 6e-75 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 237 / 2e-74 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 235 / 8e-74 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 233 / 5e-73 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039904 pacid=23165102 polypeptide=Lus10039904 locus=Lus10039904.g ID=Lus10039904.BGIv1.0 annot-version=v1.0 ATGTCGCATAACGGCAATGGCGCTCCTGCTACTAGGCGGACTCCAACGCCAGGAAAGGCAACTCTCCTCGCAATCGGCAAAGCCTTCCCTAGCCAGCTCA TCCCCCAAGAATGCCTCGTCGAAGGCTACATGCGTGACACCAATTGCAACGACCCTTCCATCAAGGAGAAACTTGAACGACTTTGCAAGACCACAACAGT GAAGCGAAGATTCACAGTGATGTCCAAAGAAATCCTAGACAAGTACCCTGAGCTGGCAACCGAGGGTTCCCCAACAATCAGGCAAAGGCTCGAGATAGCC AATCCAGCTGTAGTCGACATGGCAGCGGATGCCAGCCTGGCGTGCATCAAGGAGTGGGGGAGGCCAGTGGAGGACATTACCCACATTGTCTACGTGTCCT CCAGCGAGATCCGCCTACCTGGCGGAGACCTCCACCTGTCAAGCCGACTCGGCCTACGAAACGACGTTGGACGCGTCATGCTCTACTTCCTCGGGTGCTA CGGAGGCGTCACGGGTCTCCGAGTCGCCAAGGACATCGCGGAGAACAACCCGGGGAGCCGGGTCCTGCTGACAACCTCGGAGACCACGATCCTAGGATTC CGCCCACCGAACAAGTCCCGCCCTTACGACCTCGTCGGAGCGGCGCTGTTCGGGGACGGAGCGGCGGCGGTGGTGGTGGGTACCGGACCGGTGGAAGAGA AAGAGGACGCGTTCATGGAGCTGAGGTTTGCGGCGCAGGAGTTTCTCCCCGGGACGGAATCGGTGATCGACGGGAGGCTGTCGGAGGAAGGGATTTACTT CAAGCTGGGGAGGGATCTGCCGGAGAAGATCGAGGACAACATTGAAGGGTTTTGTAAGAAATTGATTAGGAAAGGTGGGTTGGGTGAAGCGGTTGGGTTT AACGAGCTGTTCTGGGCGGTTCATCCGGGTGGGCCGGCGATACTGAACCGGTTGGAGAGCAAGCTTGGGTTGAAAGAAGGGAAGCTGGAGTGTAGCAGGA AGGCGTTGATGGATTATGGGAATGTGAGCAGTAACACTGTGTTTTATGTGATTGAGTACATGAGGGAAGCGCTTGAGATGAAGAAGCAGAAGAATGGAGG AAAGGGAGAAGAAGATGAAGATGAAGATGAAGATGAAGAATGGGGTTTGGCTTTGGCTTTTGGACCTGGGATCACCTTTGAAGGCATACTTCTTCGCAGC TTATAA
AA sequence Show only first row Show all	>Lus10039904 pacid=23165102 polypeptide=Lus10039904 locus=Lus10039904.g ID=Lus10039904.BGIv1.0 annot-version=v1.0 MSHNGNGAPATRRTPTPGKATLLAIGKAFPSQLIPQECLVEGYMRDTNCNDPSIKEKLERLCKTTTVKRRFTVMSKEILDKYPELATEGSPTIRQRLEIA NPAVVDMAADASLACIKEWGRPVEDITHIVYVSSSEIRLPGGDLHLSSRLGLRNDVGRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTILGF RPPNKSRPYDLVGAALFGDGAAAVVVGTGPVEEKEDAFMELRFAAQEFLPGTESVIDGRLSEEGIYFKLGRDLPEKIEDNIEGFCKKLIRKGGLGEAVGF NELFWAVHPGGPAILNRLESKLGLKEGKLECSRKALMDYGNVSSNTVFYVIEYMREALEMKKQKNGGKGEEDEDEDEDEEWGLALAFGPGITFEGILLRS L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	0	1
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	1.4	0.9494
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	6.3	0.9276
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10015079 [exp]	7.5	0.9179
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	11.0	0.8900
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	11.6	0.9070
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10025246 [exp]	19.0	0.8677
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	19.3	0.9330
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	20.6	0.9280
					Lus10036535 [exp]	22.2	0.9312
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	32.2	0.9184

Compare expression of checked genes

Lus10039904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.