Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23640 71 / 7e-15 RTNLB13 Reticulan like protein B13 (.1) AT5G41600 68 / 2e-13 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G23630 62 / 3e-11 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT3G18260 58 / 3e-10 Reticulon family protein (.1) AT2G15280 57 / 5e-10 Reticulon family protein (.1.2) AT1G64090 56 / 3e-09 RTNLB3 Reticulan like protein B3 (.1.2) AT3G61560 56 / 4e-09 Reticulon family protein (.1.2) AT2G46170 55 / 7e-09 Reticulon family protein (.1.2) AT3G19460 53 / 1e-08 Reticulon family protein (.1.2) AT4G11220 53 / 3e-08 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002188 [exp] 277 / 7e-95 AT5G41600 94 / 6e-23 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10027548 [exp] 64 / 5e-12 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 63 / 1e-11 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10019812 [exp] 61 / 5e-11 AT3G19460 208 / 1e-68 Reticulon family protein (.1.2) Lus10028753 [exp] 60 / 2e-10 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10032313 [exp] 58 / 7e-10 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 57 / 9e-10 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 57 / 9e-10 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10039307 [exp] 56 / 3e-09 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G038500 [exp] 107 / 1e-28 AT2G23640 125 / 3e-36 Reticulan like protein B13 (.1) Potri.015G027300 [exp] 63 / 7e-12 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 59 / 2e-10 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 57 / 9e-10 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 57 / 2e-09 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.001G097700 [exp] 53 / 2e-08 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G165400 [exp] 52 / 8e-08 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.001G300400 [exp] 50 / 3e-07 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.013G160900 [exp] 49 / 4e-07 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.009G096200 [exp] 47 / 3e-06 AT2G15280 132 / 1e-38 Reticulon family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10039905 pacid=23165019 polypeptide=Lus10039905 locus=Lus10039905.g ID=Lus10039905.BGIv1.0 annot-version=v1.0 ATGTCCGCAGTAGGAGGCACCACCACTAGTAGTAATACTGTCGTGGGGGATGTGATCCTATGGAGAAACCCAAAACTCAGCTCCTTAGTCTTAGTCACGG CCACCCTAACTTGGGTGTTATTCAACATCTATAAATTCAGCTTCGTCACCGTTGCTTCCTGGTTCGCCATGCTCCTCGTCACTTCCTTCTACCTCTATGC CAACTTCGTCAGATTCTTCCGCAATGAAGAGCCTGATCTATCAGGTGTGCGGTTACTGCTGGAGAAGAAAGCCATGGAGGTAGAGAAATCAATGAGAGAA TGGAGTGTATTAGTGATGCAGTGTGGGTTGAGTGCAAGCACAAATCAAGACTGGAAAGTGTTTTCTCTGCTACTTATTGGGCTGGGTCTTCTTTCCTACG CTGGAACTTTGTTGGATTTCCTTACACTGTGTTACATAGGAGTTGTGATGACACTGACAGTACCGGTGATGTACAAGAAGGAGGAGGACAAAGTGTTGGA GGCTGGGGCGAAGGTGCAGCTGCTGATAATACAAATGGCTTACAAGGTTGATGAAAAAGTGTTGAGGAGGCTCAAGGGGAAGGTGGTGGCGGTGGCGGCC GTGGACGGTGACGCCGGGAAGGAGCAGCAGGATGAACTGGAGGAGGGTGATGACTTGAAGAAGACAGAGTAG
AA sequence Show only first row Show all	>Lus10039905 pacid=23165019 polypeptide=Lus10039905 locus=Lus10039905.g ID=Lus10039905.BGIv1.0 annot-version=v1.0 MSAVGGTTTSSNTVVGDVILWRNPKLSSLVLVTATLTWVLFNIYKFSFVTVASWFAMLLVTSFYLYANFVRFFRNEEPDLSGVRLLLEKKAMEVEKSMRE WSVLVMQCGLSASTNQDWKVFSLLLIGLGLLSYAGTLLDFLTLCYIGVVMTLTVPVMYKKEEDKVLEAGAKVQLLIIQMAYKVDEKVLRRLKGKVVAVAA VDGDAGKEQQDELEEGDDLKKTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	0	1
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	2.4	0.9368
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10043023 [exp]	2.4	0.9293
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	11.7	0.8510
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	13.6	0.9225
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10002776 [exp]	16.4	0.8527
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10001511 [exp]	16.5	0.9108
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	18.7	0.9034
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	20.8	0.8997
					Lus10032968 [exp]	22.4	0.8992
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10012647 [exp]	24.0	0.8986

Compare expression of checked genes

Lus10039905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.