Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 496 / 3e-172 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 449 / 1e-153 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 439 / 1e-149 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 351 / 1e-114 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G25450 333 / 3e-108 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G68530 332 / 1e-107 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G46720 331 / 1e-107 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT2G15090 329 / 1e-106 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT4G34510 323 / 3e-104 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G19440 320 / 8e-103 KCS4 3-ketoacyl-CoA synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002191 [exp] 917 / 0 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 542 / 0 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 535 / 0 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 485 / 1e-167 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 482 / 2e-166 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002192 [exp] 464 / 4e-160 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 450 / 9e-154 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 442 / 2e-150 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10033627 [exp] 432 / 3e-148 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 526 / 0 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 507 / 1e-176 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 476 / 1e-164 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 473 / 2e-163 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 473 / 5e-163 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 469 / 2e-161 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.019G091600 [exp] 426 / 5e-145 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 349 / 7e-114 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 340 / 3e-110 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.010G125300 [exp] 332 / 1e-107 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10039906 pacid=23165250 polypeptide=Lus10039906 locus=Lus10039906.g ID=Lus10039906.BGIv1.0 annot-version=v1.0 ATGGATCCTTTCTTAGCAGCTTTTATTTCTCTGCCTTTCCTCCTCTTCATAACCATCAACTTCCTCTCCAAACTCATCTCCAACAAATCCAACCAATGTT ACCTACTAGATTACAAGTGCTACAAAGGTCCCGACGAGCTCAAACTCAGCGCTGGAGCCGCAGCCAATATCTCCCTCCGTAACAAAAACCTCGGCCTCGA GGAGTACCAGTTCTTGGTCAGAACCATGGCTAGGTCCGGCATTGGAGAGGAGACTTACATCCCAAGGAACATCCACGAAGGCCGTGAAGTGAACCCTTCG CTTCCGGACTGCCTCCAGGAGCTCACCGAGGTCACGTTCACCACGTTGGACGACCTCTTTGCCACCTCGGGAGTCTCCCCTTCGCAGATTGATATCATAA TCACGACCGGTTCCCTCTTCGCCCCTATCCCTTCTTTGACGAGCCGGATAGTGAACCGGTACAAGATGAAGGAAGGGATCAAGTCGTATAGTTTGACCGG GATGGGGTGCAGCTCCAGCCTGATCGCCGTTGACCTGGTGAAAAACTCGTTCAAGACTCGACCGAATAGTTTCGCGATCGTGGTCGCGATGGAGCTGACA GCTGCCAACTGGTACGCTGGCAAGGACAGGTCCATGATGCTTTCCAACGTGCTGTTCAGGTCAGGAGGAGGGTCGCTCCTCCTAACCAACCATCCTTCCT GGGCCCACCGTGCCATGATGAAGCTTGATACGGTGGTGAGGACCCACGTGTCGCACGACGAGGCGTACGAGTGCGCCATCCACGTTGAGGACAAGGAAGG CCACCTCGGAGCACGCCTCACCAAGGCTCTACCGAGCGTGGCCATGCAAGCCATGGCGGAGAACTTCGAAGTTCTCCTTCCGAAAGTGCTTCCTCTATGG GAAATTATCCGGTTTTTTATCGCTACCCGTTGCTCGAAAATCAAACCGGTTATAGACATGAAATCAGGGATCCAGCACTTCTGCTTCCACACGGGTGGGA GGGCGGTGATAGACGGATTCCAAAGCAGCTTTGGGCTGGAGGATTACGATCTAGAACCTTCTAGAATGTCGCTGCATCGGTTCGGGAACACGTCATGTAG TAGCCTGTGGTATGTGTTGGGGTACATGGAGGCTAAGAAGAGGCTGAAGAAAGGGGACAAGGTGTTGATGGTCGGATTGGGAGCTGGGTTCCTGTGCAAC ACTTGTGTTTGGACGGTTGTGAAGGACTTGGGAGATGGGAAAAATGTTTGGGGAGATTGCGTTGACCGTTACCCGCCGAAGACGTTGGTCAACCCGATCG GGGAGGTGATGGCCTGGCTTTTTGATGAATCGATAAGTTTCACTAGGTTTGAGGATTACGTTCGTGGGGAAATGTATCTTCGTAAAGGTATAAAAGGAGG TAAGGCGATGGTCAACTTGAAAAGTGGTGTGCAACATTTCTGCGTGCATACGAGCCGGAAGGCGGTGATTGACACGTTGGGGACTAGTCTAGGACTTGAT GAGTACGATCTAAAACCTTCTAAAATAAAGCTTCGACAATTTGGATACACATCGTGCAGCAGCCCCTGGTACGTGTTTGGGTATATGGAGGCTAAGAAGA GGCTGAAGAAAGGTGATAAGGTGTTGATGATTGGGTTGGGAGCTGGTTTTATGTGCAACACTTGTGTTTGGTTGGTTATGAAGGATGACTTGGAGGATTT GAATGTGTGGAGGGGTTTCATGTGA
AA sequence Show only first row Show all	>Lus10039906 pacid=23165250 polypeptide=Lus10039906 locus=Lus10039906.g ID=Lus10039906.BGIv1.0 annot-version=v1.0 MDPFLAAFISLPFLLFITINFLSKLISNKSNQCYLLDYKCYKGPDELKLSAGAAANISLRNKNLGLEEYQFLVRTMARSGIGEETYIPRNIHEGREVNPS LPDCLQELTEVTFTTLDDLFATSGVSPSQIDIIITTGSLFAPIPSLTSRIVNRYKMKEGIKSYSLTGMGCSSSLIAVDLVKNSFKTRPNSFAIVVAMELT AANWYAGKDRSMMLSNVLFRSGGGSLLLTNHPSWAHRAMMKLDTVVRTHVSHDEAYECAIHVEDKEGHLGARLTKALPSVAMQAMAENFEVLLPKVLPLW EIIRFFIATRCSKIKPVIDMKSGIQHFCFHTGGRAVIDGFQSSFGLEDYDLEPSRMSLHRFGNTSCSSLWYVLGYMEAKKRLKKGDKVLMVGLGAGFLCN TCVWTVVKDLGDGKNVWGDCVDRYPPKTLVNPIGEVMAWLFDESISFTRFEDYVRGEMYLRKGIKGGKAMVNLKSGVQHFCVHTSRKAVIDTLGTSLGLD EYDLKPSKIKLRQFGYTSCSSPWYVFGYMEAKKRLKKGDKVLMIGLGAGFMCNTCVWLVMKDDLEDLNVWRGFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	2.2	0.8543
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	4.0	0.8422
					Lus10017461 [exp]	4.2	0.8176
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	5.3	0.8313
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10003239 [exp]	6.7	0.7854
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	7.1	0.8323
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	7.4	0.8269
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	8.4	0.7825
AT1G34630			unknown protein		Lus10043395 [exp]	11.2	0.7536
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	12.0	0.7401

Compare expression of checked genes

Lus10039906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.