Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58100 142 / 3e-43 PDCB5 plasmodesmata callose-binding protein 5 (.1) AT2G30933 92 / 2e-23 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G29380 88 / 3e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G66870 82 / 8e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT3G55430 88 / 1e-20 O-Glycosyl hydrolases family 17 protein (.1) AT4G05430 82 / 2e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G66855 81 / 3e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 85 / 1e-19 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G35740 80 / 1e-19 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G66852 79 / 1e-19 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002193 [exp] 249 / 1e-85 AT3G58100 155 / 1e-48 plasmodesmata callose-binding protein 5 (.1) Lus10012324 [exp] 88 / 1e-22 AT5G35740 164 / 8e-54 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10023276 [exp] 88 / 5e-22 AT4G05430 146 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 89 / 7e-22 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 89 / 1e-21 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10038529 [exp] 87 / 1e-21 AT4G05430 146 / 9e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10031443 [exp] 91 / 2e-21 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10039179 [exp] 89 / 5e-21 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10001516 [exp] 89 / 7e-21 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091500 [exp] 169 / 4e-54 AT3G58100 145 / 2e-44 plasmodesmata callose-binding protein 5 (.1) Potri.013G119500 [exp] 145 / 1e-44 AT3G58100 128 / 6e-38 plasmodesmata callose-binding protein 5 (.1) Potri.013G003500 [exp] 100 / 6e-25 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 100 / 1e-24 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G007800 [exp] 94 / 1e-24 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 94 / 1e-24 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 91 / 3e-23 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.006G016800 [exp] 88 / 6e-23 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 90 / 3e-22 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.014G164600 [exp] 86 / 3e-22 AT5G35740 179 / 8e-60 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10039907 pacid=23165336 polypeptide=Lus10039907 locus=Lus10039907.g ID=Lus10039907.BGIv1.0 annot-version=v1.0 ATGGATTCCAAGTTCAGTCTGTTCCTCCTACTGCTTCTAGCCCTCTGTCTCCCGCCTCTGTGGGCCGATCAGAGCGGCGCGATCGTGCCAAGGGAGCTGT GGTGCGTGGCGAAGAACAACGCGCCAGACTCTGCGCTCCAGTCGGCCATCGACTGGGCTTGTGGTGCCGGCGGCGCGAATTGCTCTCCGATACAGCAGGG TGGGCCCTGCTACGACGACAGCGACCTCCAGAGGGCGGCCTCATGGGCTTTCAACGACTACTTCTTGAAGAACGGGATGACCGACGACGCTTGCAACTTC AGCGACACCGCCGCCCTCATTTCTCTCAACCCCAGCCGTGGCAATTGCAAGTTCCCTTCGAGCCCTGGGACGAGTAGCTTTTCGACAGAAACAACAATGG GGATGGGGAGGAGCGACAGTGCAGATATGAGCAGCTGCAATCGCATTATTGCAGGTAGTAGCAGCACATGGTCTTGGGGTTTGCTAGCTGGGTATTTCTT TATGATCCTGTCGTTTAGATAG
AA sequence Show only first row Show all	>Lus10039907 pacid=23165336 polypeptide=Lus10039907 locus=Lus10039907.g ID=Lus10039907.BGIv1.0 annot-version=v1.0 MDSKFSLFLLLLLALCLPPLWADQSGAIVPRELWCVAKNNAPDSALQSAIDWACGAGGANCSPIQQGGPCYDDSDLQRAASWAFNDYFLKNGMTDDACNF SDTAALISLNPSRGNCKFPSSPGTSSFSTETTMGMGRSDSADMSSCNRIIAGSSSTWSWGLLAGYFFMILSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10039907 [exp]	0	1
AT2G28660			Chloroplast-targeted copper ch...		Lus10040870 [exp]	5.6	0.8982
AT1G67590			Remorin family protein (.1.2)		Lus10036997 [exp]	7.2	0.8993
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	8.9	0.9031
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	8.9	0.9227
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	11.9	0.9208
AT5G42330			unknown protein		Lus10013229 [exp]	15.1	0.9172
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	15.4	0.9137
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	16.1	0.9155
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	16.3	0.9181
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	17.9	0.9167

Compare expression of checked genes

Lus10039907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.