Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19170 748 / 0 Pectin lyase-like superfamily protein (.1) AT3G42950 740 / 0 Pectin lyase-like superfamily protein (.1) AT3G48950 387 / 2e-130 Pectin lyase-like superfamily protein (.1) AT3G62110 384 / 3e-129 Pectin lyase-like superfamily protein (.1) AT2G23900 370 / 7e-124 Pectin lyase-like superfamily protein (.1) AT4G33440 365 / 6e-122 Pectin lyase-like superfamily protein (.1) AT4G23500 362 / 1e-120 Pectin lyase-like superfamily protein (.1) AT4G23820 358 / 8e-120 Pectin lyase-like superfamily protein (.1) AT3G61490 357 / 9e-119 Pectin lyase-like superfamily protein (.1.2.3) AT5G41870 349 / 5e-116 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027646 [exp] 774 / 0 AT3G42950 686 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 381 / 3e-128 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 375 / 2e-125 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 372 / 1e-124 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 369 / 3e-123 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10032374 [exp] 367 / 3e-123 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 367 / 2e-122 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 362 / 2e-120 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 361 / 2e-120 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139500 [exp] 858 / 0 AT3G42950 786 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G062700 [exp] 852 / 0 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 388 / 4e-131 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 383 / 6e-129 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.014G112100 [exp] 382 / 7e-129 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 379 / 3e-127 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 375 / 4e-126 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 374 / 2e-125 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 372 / 4e-124 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 360 / 3e-120 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10039909 pacid=23173559 polypeptide=Lus10039909 locus=Lus10039909.g ID=Lus10039909.BGIv1.0 annot-version=v1.0 ATGGTGGAGACAGCGGCCCCCGTAGGTCGTTTCCAGTACCACAGGCTGGATGTGAAGCGATGGATTCCACCGTTTCTGGCATCTCACAAAACCCTTTTCA CCTTCTTGTGGATTGCCGCTTTTGCCTCTGTATTCCTTTGGCAGCAGGATGTCGTAGGCAGCCGAGGTTTCAATGTCTTCCGGCGGGCCCCTCTCCGTCC GATGCCCAAACTTCGGCCAGTGGTTTTCAATTTGACCGATTTTGGTGGGGTCGGTGATGGGATCACTGTGAATACCGCCGCCTTCGAGAGGGCGGTTTCG GCGATCTCAAAGCTTGCCAAGAGAGGAGGCGGGCAGCTGAATGTGCCTCCTGGGAGATGGCTCACTGCTCCTTTTAATCTCACCAGTCATATCACTTTGT TTCTTGCTGAGGATGCCGTTATACTTGGAATTCAGGATGAGAAGTATTGGACTTTGATGCCTCCATTGCCTTCCTATGGCTATGGAAGAGAGCATCCTGG TTCAAGATATGGGAGCTTAATTCATGGTCAAAATCTCAAGGATGTTGTCATCACAGGACACAATGGTACCATTGATGGACAAGGTCAAACATGGTGGAAG AAGTACCGCCAAAAGCTTCTCAACCACACCAGGGGCCCTCTTGTTCAAATTATGTTTTCAAGTGATATTGTGATCACTAACATAACTTTGCGCGATTCTC CATTTTGGACTCTCCATCCATACGACTGCAAGAATGTAACAATAAGGAATGTTACAATTTTGGCCCCCATATTTGAGGCCCCAAATACTGATGGAATAGA TCCAGATTCATGCGAGGACATGATAATTGAAGACTGTTACATTAGTGTGGGGGATGATGGAATTGCAATAAAGAGTGGCTGGGATCAGTATGGAATTGCC TATGGACGTCCTTCAAGAAATATTATCATCCGTAATATAGTAGTTCGCTCTATGGTCAGTGCTGGAATATCAATTGGAAGTGAGATGTCTGGTGGGGTAT CAAACGTCACAGTAGAGAATGTCCTTATATGGAACTCGAGACGTGCAGTTCGAATCAAGACTGCTCCCGGAAGAGGAGCGTACGTTCGACAAATAACATA CCGCAACCTAACATTCGACAATGTAAGAGTTGGAATCGTGATGAAAACCGACTACAATGAACACCCAGATGGTGGATATGATCCGAAGGCTGCTCCGGTG ATTAGGGACATAAGCTTCACCAGCATTCACGGGCAAGGAGTTCGGGTCCCTGTTCGCATACACGGAAGTGAAGAAATCGTAATAAGGAATGTGACCTTCC AGGACATGTCTGTTGGCCTAACTTACAAGAAGAAGCATATATTTCAGTGTGCCTTTGTTGAGGGACGTGTAATAGGGACCATTTTCCCAGCCCCCTGTGA GAACCTCGACAGGTACGATGAACAAGGACAACTTGTTAGGCGTTCTGCTTCACCCAACTCCACAGACATTGACTATGATTTTTGA
AA sequence Show only first row Show all	>Lus10039909 pacid=23173559 polypeptide=Lus10039909 locus=Lus10039909.g ID=Lus10039909.BGIv1.0 annot-version=v1.0 MVETAAPVGRFQYHRLDVKRWIPPFLASHKTLFTFLWIAAFASVFLWQQDVVGSRGFNVFRRAPLRPMPKLRPVVFNLTDFGGVGDGITVNTAAFERAVS AISKLAKRGGGQLNVPPGRWLTAPFNLTSHITLFLAEDAVILGIQDEKYWTLMPPLPSYGYGREHPGSRYGSLIHGQNLKDVVITGHNGTIDGQGQTWWK KYRQKLLNHTRGPLVQIMFSSDIVITNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMIIEDCYISVGDDGIAIKSGWDQYGIA YGRPSRNIIIRNIVVRSMVSAGISIGSEMSGGVSNVTVENVLIWNSRRAVRIKTAPGRGAYVRQITYRNLTFDNVRVGIVMKTDYNEHPDGGYDPKAAPV IRDISFTSIHGQGVRVPVRIHGSEEIVIRNVTFQDMSVGLTYKKKHIFQCAFVEGRVIGTIFPAPCENLDRYDEQGQLVRRSASPNSTDIDYDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	0	1
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	1.7	0.9752
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	2.0	0.9866
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10000636 [exp]	3.2	0.9715
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	5.3	0.9725
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	5.7	0.9765
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	7.2	0.9605
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	8.4	0.9739
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	9.2	0.9745
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	10.7	0.9727
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	12.6	0.9716

Compare expression of checked genes

Lus10039909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.