Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19150 359 / 4e-126 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT3G61470 286 / 1e-97 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT3G47470 201 / 5e-64 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT1G45474 168 / 3e-51 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT1G61520 164 / 2e-49 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT3G54890 146 / 9e-43 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT5G28450 134 / 8e-39 Chlorophyll A-B binding family protein (.1) AT1G15820 129 / 7e-36 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT3G08940 123 / 1e-33 LHCB4.2 light harvesting complex photosystem II (.1.2) AT5G01530 120 / 2e-32 LHCB4.1 light harvesting complex photosystem II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027649 [exp] 335 / 1e-117 AT1G19150 219 / 4e-72 photosystem I light harvesting complex gene 6 (.1) Lus10006416 [exp] 291 / 6e-99 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10011361 [exp] 290 / 7e-99 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10001644 [exp] 204 / 2e-65 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10021663 [exp] 202 / 2e-64 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10021730 [exp] 169 / 2e-51 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10042657 [exp] 169 / 2e-51 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10012297 [exp] 162 / 7e-49 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10016074 [exp] 162 / 7e-49 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139600 [exp] 367 / 2e-129 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.001G056700 [exp] 294 / 2e-100 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.003G171500 [exp] 293 / 5e-100 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.015G062200 [exp] 198 / 7e-63 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.014G029700 [exp] 168 / 3e-51 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.014G172400 [exp] 163 / 5e-49 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.008G041000 [exp] 142 / 3e-41 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 136 / 5e-39 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.006G099500 [exp] 127 / 4e-35 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.016G115200 [exp] 127 / 5e-35 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10039912 pacid=23173528 polypeptide=Lus10039912 locus=Lus10039912.g ID=Lus10039912.BGIv1.0 annot-version=v1.0 ATGGCTCTCACGAGCATTCCGGCCACCCCCTTATCGCTCTGTAAATTTGGCACGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTACAACA AACCTCTGAGATCATCAGCATTCGTTATCACCAACGCAACCAAAGCTGCCCCTGCTGTGTGTAAGCCCCTTCCTCCTGATAGACCACTCTGGTTCCCCGG CAGTTCAGCCCCCGCCTGGCTCGACGGCAGCCTCCCTGGTGATTTCGGATTCGACCCATTGGGTCTAGGGTCGGAGCCGGAGCAATTGAAATGGATGGCG CAGGCGGAGCTGATGCATGCGAGATGGGCAATGCTAGCGACGGCAGGGATACTCATTCCTGAAGCGATGGTGAGAGTCGACTTGCTTGACGACTTCAACT GGTACGACGCTGGTGCCAGGGAGTACTTCGCCGATCCGGTGACGTTGTTCGTGGTTCAGATGGGCCTGATGGGCTGGGCAGAAGGTAGGAGATGGGCCGA TATGGTTAACCCGGGGTCCGTGGACATCGAGCCCGTATTCCCACACAAGTCGAAGCACAAGGCGGACGTGGGTTACCCGGGAGGGTTGTGGTTCGATTTC TGGGGGTGGGGGAACGGGTCGCCGGAGCCCATAATGACATTGAGGACTAAGGAGATTAAGAACGGGCGGCTGGCGATGTTGGCGTTCGTCGGGTTCTGTT TCCAGGCAGTGTATACTGGAGATGGCCCCGTTGAGAATTTGATGGCGCACATTGCTGATCCTGGCCATTGCAATATTTTCTCCGACGTGCATGTAGCCAA GTAG
AA sequence Show only first row Show all	>Lus10039912 pacid=23173528 polypeptide=Lus10039912 locus=Lus10039912.g ID=Lus10039912.BGIv1.0 annot-version=v1.0 MALTSIPATPLSLCKFGTSSSSSSSSSSSSCYNKPLRSSAFVITNATKAAPAVCKPLPPDRPLWFPGSSAPAWLDGSLPGDFGFDPLGLGSEPEQLKWMA QAELMHARWAMLATAGILIPEAMVRVDLLDDFNWYDAGAREYFADPVTLFVVQMGLMGWAEGRRWADMVNPGSVDIEPVFPHKSKHKADVGYPGGLWFDF WGWGNGSPEPIMTLRTKEIKNGRLAMLAFVGFCFQAVYTGDGPVENLMAHIADPGHCNIFSDVHVAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10039912 [exp]	0	1
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	1.4	0.9620
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	2.2	0.9569
AT1G51100			unknown protein		Lus10011316 [exp]	2.4	0.9559
AT1G51100			unknown protein		Lus10040511 [exp]	2.6	0.9532
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	3.3	0.9650
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	6.0	0.9576
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	6.2	0.9381
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	6.5	0.9609
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	10.0	0.9378
AT1G78995			unknown protein		Lus10033323 [exp]	10.4	0.9475

Compare expression of checked genes

Lus10039912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.