Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43220 842 / 0 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 834 / 0 Phosphoinositide phosphatase family protein (.1) AT3G14205 826 / 0 Phosphoinositide phosphatase family protein (.1) AT1G22620 698 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT1G17340 641 / 0 Phosphoinositide phosphatase family protein (.1) AT3G51830 160 / 1e-41 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G51460 133 / 2e-32 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 128 / 7e-31 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G59770 118 / 7e-27 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027650 [exp] 1244 / 0 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10037446 [exp] 893 / 0 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 892 / 0 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10014827 [exp] 697 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 157 / 1e-42 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 152 / 1e-38 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 145 / 4e-36 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 139 / 2e-34 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 136 / 3e-33 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G063700 [exp] 1016 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.006G136400 [exp] 1010 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 924 / 0 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 913 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.019G080300 [exp] 681 / 0 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 676 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 170 / 8e-45 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.005G100500 [exp] 138 / 6e-34 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.013G128500 [exp] 96 / 7e-20 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10039913 pacid=23173395 polypeptide=Lus10039913 locus=Lus10039913.g ID=Lus10039913.BGIv1.0 annot-version=v1.0 ATGATAGGTAGGAACAAGGCTAGGACGTACTGGAGAGTCCTGAAGATCGACAGGCTAGATCCTTCTGAGCTCTTTATTCGTGAAGATCCTACCACCTATA CAGAGAGTGAATGTTCAGATTTGTTGAGGAGGATAAATGAGGGAAATAAGGCAACTGGCGGTTTGAAGTTTGTTACCATTTGTTATGGAATTGTTGGGTT TGTTAAATTTTTGGGTCCATATTACATGTTGTTAATCACAAAAAGGAGACGGATCGGTGCCATATGTGGTCATAATGTGTATGCTGTCTCGAATAGCAAG ATGATTCCAATTCAAAATTCTTCTGTACATGCTGATATTGTTGATTCTAAGAATGAGAACAGATACAAGAAGCTCCTATACATGGTGGACCTCACGAAGG ATTTCTACTTTAGCTACTCATACCATGTTATGCGTAGTCTTCAAAGGAACTTGTGTGATGATGCAAAAGGCCAAGTTCTCTATGAAACAATGTTTGTCTG GAATGAGTTCTTGACTCGTGGAATTCGGCATCACCTTCAAAGTACACTGTGGACTGTTGCATTAGTATATGGATTCTTCACACAGGAGACGCTTTCTATT GCTGGCCGTGACTTCAAACTTACCCTCATTGCAAGACGTTCCCGACATTATGCTGGCACCAGGTATCTCAAACGTGGTGTTAATGATAAGGGAAGGGTAG CTAATGATGTCGAGACAGAGCAAATTGTTTTTGAGGATGTTCCGGAAGGGCGGCCGGTACAAATAAGCTCTGTTGTGCAGAACCGTGGCTCTATTCCATT ATTTTGGTCGCAAGAAACTTCACGTCTCAATATCAAGCCAGACATTATGTTGTCAAGAAAAGACCAAAACTATGAAGCAACCAGACTTCATTTTGAAAAT CTTTCCAAGAGATATGGAAATCCGATAATCATACTGAACTTGATCAAAACTCGAGAGAAGAGGCCTCGAGAATCAATTCTTCGTACTGAGTTTGCTAATG CCATAAGTTACATAAACAAAGATTTACCGGAAGAGAACCGTCTACGGTTCCTTCATTGGGACTTGCACAAACATTCACGGAGCAAAGCTACCAATGCTTT ATTACTTCTAGGCAAAGTGGCAGCATATGCTTTGACATTGACAGGTTTCTTTTACTGTCAAGTAAACTCGGCATCACACTCTGAGGACTGCATTGGTTGC CCATCGTCAGAGAATGCTGAAAATTTGTCCCCCCTTAAACATCTTAACAATGGTCACGAGGATGACAATAACTTAGAGAGAAAAATCTGTGGAGTTGCTA GTGGTTCTAATGAGAAACATTTTTGCAAGCAACCAATTTTCCAGAAAGGAGTTCTGAGGACTAATTGTATAGACTGTCTCGATAGGACAAATGTCGCACA GTTTGCGTATGGGTTGGCTGCTCTTGGATGCCAGTTCCATGCTTTGGGAGTATTAGATTCCCCCAAGATTGATCTTGATGCACCTTTGGCTGATCAATTG ATGGGATTTTACGAGAACATGGGTGATACACTTGCCCATCAGTATGGTGGCTCAGCTGCTCATAACAAGATATTCTCGGAGAGACGGGGCCAATGGAAAG CAGCAACCCAGTCCCAGGAATTCTTCCGAACTCTTCAACGGTACTACAGTAATGCCTACATGGACGCACAGAAACAAGATGCTATTAACGTGTTCTTGGG GCACTTCCAACCACAGCATGGAAAACCTGCTCTTTGGGAGTTGGATTCAGACCAATACTTAAATGTGGGAACTAATGGTCAGGACCATGATACCAGGACG TCAATTGCGGGACAGTCATCTGAGAGTGTAACAAACGGAATAACGAGGGAGGCAACGCCGAATGCTAGTGAATATGGATCAATGAGGGTGGAAGCGGAGA CAGAAGAAGCAGCAGAGTCATCTGGTGCTAGTAGTTCACAGCGTCCCAATGTTCTGGAGGAATATTCTGACAGTTTCGTTCATTGGAGATTCAGTTGGAA GAACCAAAAGACAAGAGAGAGATCAAGAGACAGAGAGGTTGTGGTGGTTAGTGGTGGTGTACCTTTTGACTCTGACTCGGATCGGACACTAAAGAAAGGA GGAGTAAATAGGCAAAACAACAAGGCAAGAGAAAAAGGGGAAGATTATTTCTTGATTGGAGCTTTTCTTGCCCCATTACTAAATATCGGTTGCCCGCCAG ACGCAACGGTAGAGAGACGGCCATCAGCATCAGCATCAGCATCAGTCAACAAATAG
AA sequence Show only first row Show all	>Lus10039913 pacid=23173395 polypeptide=Lus10039913 locus=Lus10039913.g ID=Lus10039913.BGIv1.0 annot-version=v1.0 MIGRNKARTYWRVLKIDRLDPSELFIREDPTTYTESECSDLLRRINEGNKATGGLKFVTICYGIVGFVKFLGPYYMLLITKRRRIGAICGHNVYAVSNSK MIPIQNSSVHADIVDSKNENRYKKLLYMVDLTKDFYFSYSYHVMRSLQRNLCDDAKGQVLYETMFVWNEFLTRGIRHHLQSTLWTVALVYGFFTQETLSI AGRDFKLTLIARRSRHYAGTRYLKRGVNDKGRVANDVETEQIVFEDVPEGRPVQISSVVQNRGSIPLFWSQETSRLNIKPDIMLSRKDQNYEATRLHFEN LSKRYGNPIIILNLIKTREKRPRESILRTEFANAISYINKDLPEENRLRFLHWDLHKHSRSKATNALLLLGKVAAYALTLTGFFYCQVNSASHSEDCIGC PSSENAENLSPLKHLNNGHEDDNNLERKICGVASGSNEKHFCKQPIFQKGVLRTNCIDCLDRTNVAQFAYGLAALGCQFHALGVLDSPKIDLDAPLADQL MGFYENMGDTLAHQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYMDAQKQDAINVFLGHFQPQHGKPALWELDSDQYLNVGTNGQDHDTRT SIAGQSSESVTNGITREATPNASEYGSMRVEAETEEAAESSGASSSQRPNVLEEYSDSFVHWRFSWKNQKTRERSRDREVVVVSGGVPFDSDSDRTLKKG GVNRQNNKAREKGEDYFLIGAFLAPLLNIGCPPDATVERRPSASASASVNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	0	1
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	1.7	0.9018
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Lus10035269 [exp]	1.7	0.8975
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	4.5	0.8986
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	5.0	0.8888
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	5.4	0.8533
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	7.9	0.8513
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	11.7	0.8609
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	12.2	0.8911
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	12.4	0.8746
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	14.7	0.8407

Compare expression of checked genes

Lus10039913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.