Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20680 596 / 0 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT5G64020 438 / 9e-152 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT2G37720 397 / 9e-135 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 186 / 2e-53 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 182 / 4e-52 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G06230 179 / 1e-51 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 166 / 3e-46 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 164 / 3e-45 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 160 / 9e-44 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT1G01430 159 / 2e-43 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027651 [exp] 941 / 0 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10038577 [exp] 464 / 1e-161 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10037877 [exp] 358 / 2e-122 AT5G64020 404 / 1e-141 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10034039 [exp] 188 / 4e-54 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10002430 [exp] 181 / 6e-51 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 172 / 4e-48 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10011932 [exp] 171 / 8e-48 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 170 / 2e-47 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10041219 [exp] 166 / 4e-46 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140300 [exp] 632 / 0 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G065100 [exp] 503 / 8e-176 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.007G104300 [exp] 486 / 5e-170 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G064875 [exp] 431 / 2e-150 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.002G054400 [exp] 173 / 1e-48 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.006G071500 [exp] 172 / 4e-48 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.008G203900 [exp] 171 / 5e-48 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.016G074800 [exp] 167 / 1e-46 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.018G133000 [exp] 168 / 3e-46 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.015G131600 [exp] 166 / 2e-45 AT4G25360 671 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039914 pacid=23173484 polypeptide=Lus10039914 locus=Lus10039914.g ID=Lus10039914.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGTGTTTTCAAAGTGAAGGGTCGAGAGTTAACCTTTCTCCTAATAGTTCTCGTCTGCACAACTGTTATTATGCTGGCATGGGAGAGAACTC CACTTCTTTCTGCCTCACTTCCTGCAAAAGATCTGTTGCAGACATCAGAAATACCAACAAACTTACGTGAAGTAAAAGAGAAAGATAAAGATTTCATTGA AGCGGACAAAGATCTACCTGTTCATAAATCTCCAAGTTTGACAGAGGCAGAGGGTGATCCTGATCAGAATATTGAACAAAGTTCAAATATAACTACAGAA AGTAGTGCTGATGACAGAACCTCCTCAGGGGAGGAGCAAGAAGCAGAGAATATACCAAAATCTGTTGATAGTCAAGTTTGTAATTATGCCAAAGGGAAGT GGGTGGTTGATGACAGCCTGCCCCTCTACTCTGGATTTGGTTGTAAGCAATGGCTGGCACCGATGTGGGCTTGTAGGTTGATGCAACGGACTGATTTTTC TTATGAGAAGATCAGATGGCAACCAAAAGATTGTGAAATGGAACGATTTGAAGGGCGTGAGTTCTTGAAAAGGATGCAACACAAGACACTAGCGTTTGTT GGAGATTCATTAGGGCGGCAGCAGTTCCAGTCCCTAATGTGTATGATCACAGAAGGGTTGAACACAAGTGACGTAGTGGACGTAGGAGTGGAATATGGAT TTATTGCCCCTGAAAATGGTCGTCCAAGTGGGTGGGCTTATAGGTTTCCGAGCACAAATACCACTGTACTGTATCACTGGTCTTCTTGCCTCTGTGACAT TGAACCTATCGACAAGGAGAACCCAAATACTCACTATGCCATGCATCTCGACCGCCCACCAGCATTTCTGCGAGATAATCTTGATAGAATCCACGTTCTA GTTCTGAACACGGGACATCACTGGAATCGTGGGAAGCTGAATTCTAACCGCTGGATAATGTATGTAGGGGGAGTGAAGAATATTAACCGGAAGCTGATAG CTATGGGAGATGCTAAAAATTTCACGATACACAGCATTGTTAGTTGGGTGAACAGCCAGCTTCCGAAGCATCCGCAATTGAAGGCATTCTATCGTAGCAT ATCTCCGAGACATTTCGTGGGTGGGGACTGGAACACGGGTGGAAGTTGCGATAACACGAAGCCTATGTCGATAGGGAAGGAATTGTTGGAGGAAGTGTCT AGTGATTACAGCGCTAGGAATGCAGTGGAGGGAACCGGGGTAAAGATATTGGACATAACATCTTTGTCGAAGCTTAGAGATGAGGGCCATATTTCGAAAT ACAGCATTACAGCTGCAGCTGGAGTGCAAGATTGCTTGCATTGGTGTTTACCTGGTGTTCCCGACACATGGAATGAAATGCTATTTGCACAAATCGGGGG TTCTTCGCCGAGAAGGGTGTAG
AA sequence Show only first row Show all	>Lus10039914 pacid=23173484 polypeptide=Lus10039914 locus=Lus10039914.g ID=Lus10039914.BGIv1.0 annot-version=v1.0 MKGGVFKVKGRELTFLLIVLVCTTVIMLAWERTPLLSASLPAKDLLQTSEIPTNLREVKEKDKDFIEADKDLPVHKSPSLTEAEGDPDQNIEQSSNITTE SSADDRTSSGEEQEAENIPKSVDSQVCNYAKGKWVVDDSLPLYSGFGCKQWLAPMWACRLMQRTDFSYEKIRWQPKDCEMERFEGREFLKRMQHKTLAFV GDSLGRQQFQSLMCMITEGLNTSDVVDVGVEYGFIAPENGRPSGWAYRFPSTNTTVLYHWSSCLCDIEPIDKENPNTHYAMHLDRPPAFLRDNLDRIHVL VLNTGHHWNRGKLNSNRWIMYVGGVKNINRKLIAMGDAKNFTIHSIVSWVNSQLPKHPQLKAFYRSISPRHFVGGDWNTGGSCDNTKPMSIGKELLEEVS SDYSARNAVEGTGVKILDITSLSKLRDEGHISKYSITAAAGVQDCLHWCLPGVPDTWNEMLFAQIGGSSPRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	0	1
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	1.4	0.8993
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	1.4	0.9007
AT5G60750			CAAX amino terminal protease f...		Lus10017536 [exp]	2.2	0.8926
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	2.4	0.8983
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024188 [exp]	2.6	0.8699
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	4.5	0.8629
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	5.5	0.8557
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	6.9	0.8935
AT3G44670			Disease resistance protein (TI...		Lus10028343 [exp]	6.9	0.8493
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	9.7	0.8364

Compare expression of checked genes

Lus10039914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.