Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33140 327 / 4e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027652 [exp] 586 / 0 AT4G33140 352 / 6e-121 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216500 [exp] 350 / 3e-120 AT4G33140 350 / 3e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06941 [flax] [poplar] NT5C 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Representative CDS sequence Show only first row Show all	>Lus10039915 pacid=23173467 polypeptide=Lus10039915 locus=Lus10039915.g ID=Lus10039915.BGIv1.0 annot-version=v1.0 ATGACTTGTTTGAATCGTTACGGCGCCGATCTATCGTTCTGTAGAAACCTCTCTTCTTTGTCGTCCCACCCGAGCCCTTCACCAGTCCCCCGTACTCCTT CACTTGATTTTCCTCGTGTCCAGGCTTTCAGGAACATCGTTACTAACAAAGCCGAGACCAAATCATCCGCGTTCAGCAATGGATTCAAGTTGACGTGTTG CCTTGATCCTCAACTCAAGGCAATCAATGATCAGAGGGCGCATGCAATTCCCCCTCATTTGGTGTGTCGGACGGATGAAAATAATGGTGTTAGTAATGCT GGATTGCTAAGTATTCATACTGCTCGCCATGGAGGAAAGCCTTTTGGATTTGGCAAAAAGTCTGCAACTGACAAAGTTGTTGTTGCAGTTGATGTTGATG AAGTTCTGGGGAACTTCGTGTCAGTGTTGAACAAATTCATTGCAGATCGCTACTCCATGAACCATTCAGTATCAGAATACCATGTATACGAGTTTTTCAA GATTTGGAATTGCTCAAGAGATGAAGCTGATACTCGGGTTCACGAATTCTTCAAGACTGCTTATTTCAAGAATGGGATCGACCCTCTTCCGGGGGCTCAG CAGGTGCTTCATAAGTTGTCAAGGCAGTGTAAATTATCAGTAGTGACGTCCCGTCAAACTGTCATCAAGGACCACACAGTGGAGTGGCTAGAGAAACATT ATCCAGGACTGTTTCATGAGATTCACTTCGGGAACCATTTTGCATTGGAAGGAGAGTCTAAACCCAAGTCAGAAATATGCAGATCTTTAGGTGCAGATAT TCTGATTGATGACAACCCAAGATATGCGATGGAGTGTGCTGAAGTTGGGATTCGGGTCTTGCTTTTCGATTACGAGAACTCATACCCATGGTGCAAATCT GATTCAGTGGAGCAACATCCCCTGGTCACTAAAGTTTATAACTGGCAACAAGTAGAGAAGCACATAGCATCGTTGACTGCTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10039915 pacid=23173467 polypeptide=Lus10039915 locus=Lus10039915.g ID=Lus10039915.BGIv1.0 annot-version=v1.0 MTCLNRYGADLSFCRNLSSLSSHPSPSPVPRTPSLDFPRVQAFRNIVTNKAETKSSAFSNGFKLTCCLDPQLKAINDQRAHAIPPHLVCRTDENNGVSNA GLLSIHTARHGGKPFGFGKKSATDKVVVAVDVDEVLGNFVSVLNKFIADRYSMNHSVSEYHVYEFFKIWNCSRDEADTRVHEFFKTAYFKNGIDPLPGAQ QVLHKLSRQCKLSVVTSRQTVIKDHTVEWLEKHYPGLFHEIHFGNHFALEGESKPKSEICRSLGADILIDDNPRYAMECAEVGIRVLLFDYENSYPWCKS DSVEQHPLVTKVYNWQQVEKHIASLTAAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	0	1
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	2.6	0.7642
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10022029 [exp]	8.4	0.7502
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	8.8	0.6909
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10020489 [exp]	9.4	0.7318
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	17.7	0.7163
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	22.4	0.7122
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	28.1	0.7319
AT5G24260			prolyl oligopeptidase family p...		Lus10022408 [exp]	34.2	0.7150
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10012771 [exp]	38.8	0.6516
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10026992 [exp]	39.0	0.7110

Compare expression of checked genes

Lus10039915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.