Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30570 85 / 3e-19 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G79460 71 / 4e-14 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 44 / 5e-05 ATTPS03 terpene synthase 03 (.1.2) AT5G48110 43 / 0.0001 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 42 / 0.0002 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G39770 0 / 1 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 0 / 1 Glucose-1-phosphate adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006923 [exp] 109 / 4e-27 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024356 [exp] 100 / 2e-24 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10014673 [exp] 100 / 4e-24 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10010879 [exp] 92 / 1e-23 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10014608 [exp] 90 / 7e-22 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10030156 [exp] 92 / 2e-21 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10029033 [exp] 84 / 2e-18 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 84 / 2e-18 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10020865 [exp] 81 / 2e-18 AT1G79460 130 / 1e-34 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082400 [exp] 78 / 2e-16 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 78 / 2e-16 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G142800 [exp] 47 / 8e-06 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 44 / 5e-05 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 42 / 0.0002 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.006G090300 [exp] 0 / 1 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 0 / 1 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 0 / 1 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 0 / 1 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10039916 pacid=23173512 polypeptide=Lus10039916 locus=Lus10039916.g ID=Lus10039916.BGIv1.0 annot-version=v1.0 ATGGAGGCTACTCCTCCACCAAAATCATCACTTGACACTGATCGGGGTGGCGCCACATCTCCTGCCAAGTTGGTTGTACTTCCACCGCCATGGCCGGCTT CATCGTTGCCCACATGCTCCTCTTCCACAACAGTCTATATAGGATATTGTTTCTTCACCGCCGCAGCAATTCTCTTTGAACCTAAGCTCTGTCATGCCCG CATCTCATGGGCCAAACATGGTGTTCTTACTGCTTTCATTGATGACTTGTATGACATTGATGGAACAACAGAGGAAAAGATTCACCTTATTGAGCTCTTG GAGAGGTATTCTGCTTGCAGGAGACTGAACCCGCTTGGCATGGCAGGTCCCCTGGCTTTAGCTAAAGATAACCTTCTAGATGGTTCAGGTGAGCCCTTCT TTGTCCTAAACAACGATGTTATAAGCGACTATCCTCTGCAAGAAATGATTTCATTTCACAAGAGCCATCGAGGGGAGGCTTCCATAATCTATAACAAAGG TGGACGAGCCATCGAAATACGGAGTGGTGGTTATGGAAGAAGCAACAGGGAAGGTAGAGAAGTTTGCCAAGAGACCAAAGATTTTCATGGGGAACAAGAT GAACGCAGGCATCTACCTGCTGAATCCATCCGTGCTGGACAGGACCGCACTAGGACCAACCTCGAACGAGAAAGAAGTTTTCCCAGAGATCGCAAGTGA
AA sequence Show only first row Show all	>Lus10039916 pacid=23173512 polypeptide=Lus10039916 locus=Lus10039916.g ID=Lus10039916.BGIv1.0 annot-version=v1.0 MEATPPPKSSLDTDRGGATSPAKLVVLPPPWPASSLPTCSSSTTVYIGYCFFTAAAILFEPKLCHARISWAKHGVLTAFIDDLYDIDGTTEEKIHLIELL ERYSACRRLNPLGMAGPLALAKDNLLDGSGEPFFVLNNDVISDYPLQEMISFHKSHRGEASIIYNKGGRAIEIRSGGYGRSNREGREVCQETKDFHGEQD ERRHLPAESIRAGQDRTRTNLERERSFPRDRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10039916 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	11.2	0.8081
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	11.5	0.8201
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	13.0	0.8282
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	14.3	0.8268
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	21.4	0.8163
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	32.3	0.7789
AT4G11690			Pentatricopeptide repeat (PPR-...		Lus10037319 [exp]	32.3	0.7878
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	42.2	0.7746
					Lus10007146 [exp]	46.9	0.7678
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003564 [exp]	52.2	0.7586

Compare expression of checked genes

Lus10039916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.