Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 444 / 2e-150 Protein of unknown function, DUF547 (.1.2) AT1G16750 377 / 1e-124 Protein of unknown function, DUF547 (.1) AT5G47380 183 / 4e-50 Protein of unknown function, DUF547 (.1) AT5G66600 181 / 2e-49 Protein of unknown function, DUF547 (.1.2.3.4) AT4G37080 152 / 2e-39 Protein of unknown function, DUF547 (.1.2.3) AT2G39690 148 / 4e-39 Protein of unknown function, DUF547 (.1.2) AT4G33130 142 / 7e-39 unknown protein AT2G23700 149 / 5e-38 Protein of unknown function, DUF547 (.1) AT3G12540 144 / 5e-37 Protein of unknown function, DUF547 (.1) AT5G42690 140 / 6e-36 Protein of unknown function, DUF547 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027653 [exp] 1085 / 0 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10033328 [exp] 431 / 5e-144 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 419 / 1e-138 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 401 / 7e-133 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10035703 [exp] 355 / 1e-109 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10022480 [exp] 161 / 3e-42 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 160 / 6e-42 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 158 / 2e-40 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10021450 [exp] 139 / 1e-34 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216800 [exp] 699 / 0 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 403 / 4e-133 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 171 / 8e-46 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 163 / 3e-43 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 162 / 1e-42 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 157 / 6e-41 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 153 / 2e-39 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.010G202900 [exp] 147 / 1e-37 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 144 / 1e-36 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G041100 [exp] 143 / 3e-36 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10039917 pacid=23173529 polypeptide=Lus10039917 locus=Lus10039917.g ID=Lus10039917.BGIv1.0 annot-version=v1.0 ATGCTTTGTTTGAAAGCAGAAGCTTTTGACGACCATCACCCCGATCTTGTCGACGGTGGAGACAAGATTGATTCAATCACTGGCGGCGCTGATTCTCCAG GATTTGTTCTTCCCATTAGTTTTGGAAGTTCCCTTCATAAGTATTTCTGGAAGATGGGTAAGGTTTCCACTCGATCCATCTCTTCCGGGGATGCCTCTCC TTCTTGTCCACCTTCCGATTTTGAGGAAACTAATACTCAAGAGAAGAAGAGTGAACTTGCGAAAGATGGAGATATCTCTCTTTACAAGCACAAGCTTGAG AAAGAAGTGAAAATATTGCAGCAGAAATTGCAACAAGAGGTTGACTTGCGCTTGGCCCTTCGAAATGCTGTTGAACATTCTAACTCAGCTTCTGAATCAC CCTCTCCACTTCCATATAAGGCCCAAGAGCTCTTGGATAATATAACTATCCTCGAGGATATTGTTTCAAACCTTGAACAAAAGTCAGTTTCCTTGCAATA TCAACTCAGTCAAGAGAGGAATGAGCGCCGTATCACTGAGTATCGCCTGAAGCATTTGCCTATTTTAGCATCCTCCATGTTCAATTCTTTTAACTCTAAT ATACCAAAGACGATAACTAGACCTGGCAGCAGAGAGAACACAGAAGGAAAGATGGAGGAGAAGCCTCCATGGTCTGACTTAGTTAATGAACCAAATAAGG ATTATTTTGTTGAGAAACTATGGCACAGACCTAACCAGCTTTCAGAAGCAATGGTGTTGTGCATGAGAGATATTTTCCTTTTCTTGGCGGACTCCTCCAA AATCTCTTCTTTGAAGTCTATGGTCTCACCATCTTCGCCTCCGGGGGCACAATTACTGAATTCCTGTTTGGCATCTTTCACAGACTCAAATTCGTCAACG AGAAGTTTTATAGGTGACATGGAACAGGACTCTCAAGTATCAGGAAGTTATTTCACGTTTGATCCATATGGAGTTCCTGGTAAAGTAGAATGGAATAAAG GTATTGGAGCTTACAGGAATGCAGTTGAAGTCTCTTGGTTGTCAGTTGGGAAGAAAGAGCTTGAATATGCATCTGGTGCTCTCAAACGATTCAGGTTGCT TGTGGAGCAGTTGGCTGAAGTTAACCCATCACATCTTGATTGCAATGAAAAGCTAGCATTTTGGATCAATGTGTACAATGCGTTAATAATGCATGCATTT TTGGCATACGGAGTTCCAAGGAGTGATATTAAACTATTTTCCTTAATGCAGAAGGCGGGATACACAATTGGGGGGCATTCAGTCAGCGCTGCAGATATCG AATATGTTATACTGAAGATGAAGCCCTCAGCACATCGACGTCAAATATCGTTCGTTTTTGCTCTTCAAAAACTGAAAGCGGCAGATGAACTGAAGTGCTT TTCAATCAATCAACCAGAGCCTCTTCTGGCTTTTGCTCTAAGCTGTGGGATGTATTCTTCACCTGCAGTTAGAATCTTCAAGCCGGAGAATGTTAATGAA ATACTTGTTAGGTCATTGAAGGATTACGCTCAAGCATCGGTTGGGATAGGGAACAAGGGGAAGATATTGGTGCCTAAGTTGATACATTGTTTCACCAAAG GAACTGTGGACGATTCTCAGTTGCCAGAGTGGCTTTCCGAGTTGCTGTCAGCTGAGCAAGCTAGCATAGTCAATGAGTGTTCATCTAACCAAAAGTGGAA ACTACTCGGTGTTCGGAGCGTCTCTGTATTGCCTTTTGATTCGAGGTTCCGGTTTCTCTTCCTCTTGTAG
AA sequence Show only first row Show all	>Lus10039917 pacid=23173529 polypeptide=Lus10039917 locus=Lus10039917.g ID=Lus10039917.BGIv1.0 annot-version=v1.0 MLCLKAEAFDDHHPDLVDGGDKIDSITGGADSPGFVLPISFGSSLHKYFWKMGKVSTRSISSGDASPSCPPSDFEETNTQEKKSELAKDGDISLYKHKLE KEVKILQQKLQQEVDLRLALRNAVEHSNSASESPSPLPYKAQELLDNITILEDIVSNLEQKSVSLQYQLSQERNERRITEYRLKHLPILASSMFNSFNSN IPKTITRPGSRENTEGKMEEKPPWSDLVNEPNKDYFVEKLWHRPNQLSEAMVLCMRDIFLFLADSSKISSLKSMVSPSSPPGAQLLNSCLASFTDSNSST RSFIGDMEQDSQVSGSYFTFDPYGVPGKVEWNKGIGAYRNAVEVSWLSVGKKELEYASGALKRFRLLVEQLAEVNPSHLDCNEKLAFWINVYNALIMHAF LAYGVPRSDIKLFSLMQKAGYTIGGHSVSAADIEYVILKMKPSAHRRQISFVFALQKLKAADELKCFSINQPEPLLAFALSCGMYSSPAVRIFKPENVNE ILVRSLKDYAQASVGIGNKGKILVPKLIHCFTKGTVDDSQLPEWLSELLSAEQASIVNECSSNQKWKLLGVRSVSVLPFDSRFRFLFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	0	1
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	8.5	0.8242
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	10.3	0.8298
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	10.5	0.8003
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	11.6	0.8148
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10026685 [exp]	17.0	0.7387
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	26.3	0.8117
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	26.6	0.7941
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	28.6	0.7471
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	29.0	0.7657
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	35.4	0.8019

Compare expression of checked genes

Lus10039917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.