Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26460 650 / 0 SMU2 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027665 [exp] 860 / 0 AT2G26460 709 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064100 [exp] 716 / 0 AT2G26460 706 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07807 [flax] [poplar] RED_C RED-like protein C-terminal region PF07808 [flax] [poplar] RED_N RED-like protein N-terminal region
Representative CDS sequence Show only first row Show all	>Lus10039918 pacid=23173423 polypeptide=Lus10039918 locus=Lus10039918.g ID=Lus10039918.BGIv1.0 annot-version=v1.0 ATGTCGTCCAGCAAACGTCACCACAAGGAGAAATTCGCTCGCAAGAAAGAGGAGAAACCGGAGGAACCAGAGACACCTAGATACAGGGACCGTGCGAAGG AGCGAAGAGAAGATCAGAATCCCGATTATGAGCCCACGGAATTGGGTTCTTTTCATGCCGTTGCGCCTCCTGGTGCGCTTGATATCCGCGCAGCAGAGGC CCAAAAGATTTCCATTGAGAAGAGCAAGTACCTTGGAGGTGATGTGGAGCATACGCATTTGGTGAAAGGGCTGGACTATGCCCTCCTCAATAAAGTTAGA AGTGAGATTGGGAAAACGGATGCTGATGATGATGCCGACGACAAGTCTAGAAAATCGAAGGAAGATCAACAGGTATCCTTTCGGACAGCAACCGGAAAGG CTGTGTATCAGAGGATAGTCAAGCCTCAAACTATTATGAAGACAAATGATATGTTTCTTCCCGGTAGAATGTCATTTATATATAATACGGAAGGTGGTTA CTATCATGATATTCCAACCACATTGCAGAGAAGCAAAGCTGATTGCCCTGTCCCTGAGGAAATGGTCACTGTCAGTGTTGATGGCTCTGTGCTCGACAGA ATTGCTAAAATTATGTCATATCTTCGCCTTGGCTCTTCTGGAAAGGTTCTCAAGAAGAAAAAGAAAGACAAAGGTGCGAAGGTAAAAACTTCAACTGTTG GTAATGAGTATGGTGAAGAGGATAGACGAACAAAGCATAGTGAGTCAATCTCGAGTATGAAGATCGAGAGGGAGAGTCTGCCCCCACCTCCTCCGCCTCC TATGAAGAGTCAGCCTGATTCTATGGCGAAGCAGGAACCTGTCTCTAGAACAGATGAGGAGGACATATTTGTGGGAGACGGTATTGACTATAGTATACCT GGGAAAGACATGAGTCAAAGCCCTATCTCAGAGGACATGGAAGAGTCTCCTCGTAGCAAAGAAAAAGTTCTGTATTTCAATGAACCAGCTTATGGCCCCA TCCCTCCTGCACCTTCTCAAGAATGGCAGGACCCTAATGGCTATGATGCTGTTCAAGCACAGGCATACGCGAGTGCCTACCAGGGAGGAGAGTGGCAAGA GTATCAATATGCCGAGCAAGTAGCCTATCCTGACCAGTACCTGCAGCAAACTTACGAGATGCAGGCGGGTGCAGAAATCCCACAAGATCCACACTTCATG ACGCAAGAAGAGAAAGACCGGGGTTTAGGGTCAGTGTTCAAGCGAGATGATCAAAGGCTTCAGCAACTGAGAGAGAAAGACGCAAGAGAGAAAGACCCCA ATTTTGTGTCTGAGAGCTACTCTGAATGTTATCCTGGTTATCAAGAATACAACCGCGAAGTTGTCGACAGTGATGATGAAGATGACTTGTCCAAAATGGA TATGGGCGGGCGGGCAAAAGGGCGTCTTCATCGGTGGGATTTTGAGACAGAGGAAGACTGGGCAAAGTACAATGAGCAGAAGGAAGCAATGCCGAAAGCA GCGTTCCAGTTTGGGGTGAAGATGCAAGATGGTAGAAAGACAAGGAAACAAAACAAGGACCAGAAGCTGAATAATGAGCTGCACAAGATTAATAAACTTC TGGCCAGAAAGAAAATGGACAAGGATGGCGGTGACGATGGTGGCGGCGACTACGATGACGACATACAAGCTGGCAAGAAGCAACGATTATGA
AA sequence Show only first row Show all	>Lus10039918 pacid=23173423 polypeptide=Lus10039918 locus=Lus10039918.g ID=Lus10039918.BGIv1.0 annot-version=v1.0 MSSSKRHHKEKFARKKEEKPEEPETPRYRDRAKERREDQNPDYEPTELGSFHAVAPPGALDIRAAEAQKISIEKSKYLGGDVEHTHLVKGLDYALLNKVR SEIGKTDADDDADDKSRKSKEDQQVSFRTATGKAVYQRIVKPQTIMKTNDMFLPGRMSFIYNTEGGYYHDIPTTLQRSKADCPVPEEMVTVSVDGSVLDR IAKIMSYLRLGSSGKVLKKKKKDKGAKVKTSTVGNEYGEEDRRTKHSESISSMKIERESLPPPPPPPMKSQPDSMAKQEPVSRTDEEDIFVGDGIDYSIP GKDMSQSPISEDMEESPRSKEKVLYFNEPAYGPIPPAPSQEWQDPNGYDAVQAQAYASAYQGGEWQEYQYAEQVAYPDQYLQQTYEMQAGAEIPQDPHFM TQEEKDRGLGSVFKRDDQRLQQLREKDAREKDPNFVSESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEDWAKYNEQKEAMPKA AFQFGVKMQDGRKTRKQNKDQKLNNELHKINKLLARKKMDKDGGDDGGGDYDDDIQAGKKQRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10039918 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	1.7	0.9143
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	3.5	0.9018
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	6.9	0.8778
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039305 [exp]	6.9	0.8685
AT3G13670			Protein kinase family protein ...		Lus10026214 [exp]	8.3	0.8530
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	10.0	0.8788
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	13.4	0.8650
AT1G69070			unknown protein		Lus10036815 [exp]	22.4	0.8815
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	25.5	0.8901
AT4G12540			unknown protein		Lus10025820 [exp]	25.8	0.8717

Compare expression of checked genes

Lus10039918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.