Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 870 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 634 / 0 unknown protein AT5G60710 58 / 2e-08 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 56 / 7e-08 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 53 / 8e-07 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 46 / 0.0001 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027666 [exp] 1462 / 0 AT1G19110 874 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10008122 [exp] 713 / 0 AT1G19110 732 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10013159 [exp] 676 / 0 AT1G19110 709 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10021458 [exp] 60 / 6e-09 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 56 / 1e-07 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 53 / 7e-07 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 46 / 0.0001 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 46 / 0.0001 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062500 [exp] 951 / 0 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.001G166800 [exp] 759 / 0 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.003G068000 [exp] 748 / 0 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.009G010350 [exp] 57 / 3e-08 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 52 / 2e-06 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 50 / 4e-06 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 49 / 2e-05 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 48 / 3e-05 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Lus10039919 pacid=23173550 polypeptide=Lus10039919 locus=Lus10039919.g ID=Lus10039919.BGIv1.0 annot-version=v1.0 ATGGCAACAACAGAGGATTTCGTAACATCAGTTGAGGACGGAATCAAGCTTTCCAAGCGGATATATTTAGGCAAGGATAGAGCGGTAGCTCCTCCTAAGA TTCCGGTGATGATGGATAAATCTGTCACCGATGCTTTCCTCCCAAAATCACCCATGGTTTATGCTGTCATCTGCAACCCTGGTATCGTTGACAATCCCGA TATACCTAGCTACCAGCCTCACGTGCACGGCAGGTGCGACCCCCCTGCTCTTATTCCTCTTCAGATGAACCGCATCGAGCTTCAGGTTGATTGCTTCTTT GATCGTGTCTTCGTCCAAATTACCGGATCCTGGAGGGTTCACTGTGTTATGGGAAGTAAGAGCTGCGACTGCCGAATTGCTATTCCTATGGGGGAACAGG GTTCAATTCTAGGTGTCGAGGTGGAGGTTCATAGGAAATCGTATGCTACGGACATAATCGCACTACATGACATAAATGGCGAGGATAAAGAACCCCGCCC TGAAAATGGAGGTTATCTCAAAAGTAACATTTTTACCGTCACAGTCCCAAAGGTTGATGGGGGTACCATACTCTCAATTAAAGCTAGTTGGATGCAGAAA TCACAATTTAGCAAGGGCGAATTTTATGTTGAAGTTCCCTTCAGTTTCCCCGAGTATGTCACTCCATTTGCGAAGAAGCTACCCAAGAAAGAGAAGATAC TGCTGAATTTGAATTCTGGTTCTGCAACTGAGATTATTTGCAGAAATACCAGTCATCCTTTGAAGGAGGTCAGAAGAGAAGCTGGGAAGCTGTGTTCCGC TTATGCAACTGAAGTGCTTACTTGGACACACAATGATTTCACTTTCTCATACGCTATCCCATCAAGCAATGTTTTCGGGGGTGTGCTTTTGCAAACGCCA GCTATCCATGATACTGATCAAAGAGAGATGTTTTCTGTGTACCTTTTTCCTGGGAATCAGCAAAGCAAGAAGGTGTTTAGAAGAGAGATTGTATTTGTTA TTGATATCAGTGGAAGCATGGAAGGAAAACCAATTCAGGCCACAAAGAACGCAGTACACATTGCTCTCGACAAGCTCGAACCAAAAGATTCATTCAATAT AATTGCATTTAATGGAGAGTGTTCTATCTTTTCATCATCGATGGAATCGGCAACCGAAAATGCAATTAACAAGGCTTCTCAATGGATCAATTCAAATTTT GTGCCCAGTGGCAGTACAAATATTTCGCAGGCCCTCAATAAGGCAATAGAAATGGTGTCCAAAAAGAGTGGTACAATACCTCTCATATTCCTTGTGACTG ATGGGACAGTTGAAGATGAAAGACATATTTGTGAAGCAATAAAAAGTGAATGTACAGATGGAAAAGAAATTGCTCCACGGATACACACCTTCGGCATAGG GATGTACTGCAATCATCATTTCCTAAGGATGCTGGCAGTTCTTTGTAGGGGAGAATATGATGCTGCTTATGAACTAGATTCTATCGAGACCAGGCTGCAA ACTTTCTTCAGCAGAGCTTTGTCAACATTTCTCACAAATATAACACTCAATGCATTGGATAATGTCCATGAACTTGAGACGTTTCCTTCTAGTCTTCCAG ACCTTTCATCCGAAGGGTTGTGGACTATTTCTGGCAGATATGTTGGAGAGTTACCCGACTCCTTTAGAGTCGAAGGTGTTTTGGGAGACATGAGTAGATT CACTGTGGACTTGAAAACACGGAACGGCAAGGACATTCCTCTGGACAAGATGTTTGCAAAGCAACAAATTGACATTCTAACATCTCAGGCATGGTTTTCA ATAAGTAAAGAGCTAGAGGAGAAGGTTTCGAAAATGAGTGTTCAAACTGGGGTCGTATCCGAATATACACACATGTCAGTGCTAGAAACAGAGACAGTGT ATGAAGCCACAGAACATCAAGGAGGACGCAAGACGTCAAAGAAAGCTAGCTCGGAGAAGGGGGGATCGGCGAGTCGGAGAAGAATAGTGTTGGCAGGAAT GGGGATTGGGTTTGGTAATTTGGCAGCCACGATTGATAATACACGTCCAGGAGCGGAGGAACAAAGGTTGCCAGAGGCAGCAGAGATGATGATAAAGGCA GCGTCAAACTGCTGTGGGAGGTTATACGGGGACTGCTGCTGTATGTGCTGCATCCAGTGCTGCTCGAGGATGAATAACCAGTGCGCAATTGCCTTGACGC AGTTCTGCACTGCTCTAGCGTGTTTCGGCTGCTTTGAGTGTTGGGCTGCCATTTGTTGTTCGGGAGAAGACGGCAAATGA
AA sequence Show only first row Show all	>Lus10039919 pacid=23173550 polypeptide=Lus10039919 locus=Lus10039919.g ID=Lus10039919.BGIv1.0 annot-version=v1.0 MATTEDFVTSVEDGIKLSKRIYLGKDRAVAPPKIPVMMDKSVTDAFLPKSPMVYAVICNPGIVDNPDIPSYQPHVHGRCDPPALIPLQMNRIELQVDCFF DRVFVQITGSWRVHCVMGSKSCDCRIAIPMGEQGSILGVEVEVHRKSYATDIIALHDINGEDKEPRPENGGYLKSNIFTVTVPKVDGGTILSIKASWMQK SQFSKGEFYVEVPFSFPEYVTPFAKKLPKKEKILLNLNSGSATEIICRNTSHPLKEVRREAGKLCSAYATEVLTWTHNDFTFSYAIPSSNVFGGVLLQTP AIHDTDQREMFSVYLFPGNQQSKKVFRREIVFVIDISGSMEGKPIQATKNAVHIALDKLEPKDSFNIIAFNGECSIFSSSMESATENAINKASQWINSNF VPSGSTNISQALNKAIEMVSKKSGTIPLIFLVTDGTVEDERHICEAIKSECTDGKEIAPRIHTFGIGMYCNHHFLRMLAVLCRGEYDAAYELDSIETRLQ TFFSRALSTFLTNITLNALDNVHELETFPSSLPDLSSEGLWTISGRYVGELPDSFRVEGVLGDMSRFTVDLKTRNGKDIPLDKMFAKQQIDILTSQAWFS ISKELEEKVSKMSVQTGVVSEYTHMSVLETETVYEATEHQGGRKTSKKASSEKGGSASRRRIVLAGMGIGFGNLAATIDNTRPGAEEQRLPEAAEMMIKA ASNCCGRLYGDCCCMCCIQCCSRMNNQCAIALTQFCTALACFGCFECWAAICCSGEDGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	0	1
AT3G04160			unknown protein		Lus10042519 [exp]	10.6	0.6722
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	15.5	0.6822
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	16.8	0.6618
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	17.4	0.6656
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	19.7	0.6539
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	21.7	0.6491
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	22.0	0.6636
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	25.8	0.6595
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	27.2	0.6450
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	40.3	0.6238

Compare expression of checked genes

Lus10039919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.