Plant FIBer expression Database

Lus10039920 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19130 295 / 3e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027661
[exp]
372 / 1e-133 AT1G19130 294 / 6e-103 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G140000
[exp]
285 / 4e-99 AT1G19130 269 / 6e-93 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF06172 Cupin_5 Cupin superfamily (DUF985)
Representative CDS sequence
>Lus10039920 pacid=23173513 polypeptide=Lus10039920 locus=Lus10039920.g ID=Lus10039920.BGIv1.0 annot-version=v1.0
ATGGGTTATGCTGCATCAGAGATCGTGAAAAGATTGAATCTTGAGCCTCACCCAGAAGGTGGTTTCTTCTGCGAAACCTATCGGGACACTTCCATTACTC
TCTCCACCTCTCACCTTCCCTCCACATTTAAGGTTGACCGTCCCGTGAGCACATCTATCTACTTCATGCTTCCTTCTGGGAGTGTGTCTGCTCTTCATCG
AATCCCCTGTGCAGAGACCTGGCATTTTTACTTGGGAGAACCTCTTACGGTATTGGAATTAAGTGATGATGGAAACATAAAGTTAACCTGCCTCGGACCT
GATCTTGTCCGTGACAATCAACAACCACAGTACACCGTGCCTCCGAATGTCTACTTCGGTTCTTTTCCAACTAAAGACTACACCATTTCAACTGATGGTT
CAGTTGTCAAAAATGAGCCAAGGGACAAAGAGAGCCACTACTCCTTGGTAGGTTGCACTTGCGCACCTGCTTTTCAGTTTCAGGACTTTGAGATGGCAAA
GCGATCCGACCTTGTTTCGAAATTTCCTCAGCACGAGTCTTTTATCACTTTGCTCACATACAACGACAAATGA
AA sequence
>Lus10039920 pacid=23173513 polypeptide=Lus10039920 locus=Lus10039920.g ID=Lus10039920.BGIv1.0 annot-version=v1.0
MGYAASEIVKRLNLEPHPEGGFFCETYRDTSITLSTSHLPSTFKVDRPVSTSIYFMLPSGSVSALHRIPCAETWHFYLGEPLTVLELSDDGNIKLTCLGP
DLVRDNQQPQYTVPPNVYFGSFPTKDYTISTDGSVVKNEPRDKESHYSLVGCTCAPAFQFQDFEMAKRSDLVSKFPQHESFITLLTYNDK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G19130 unknown protein Lus10039920
[exp]
0 1
AT5G27710 unknown protein Lus10031519
[exp]
2.2 0.8654
AT4G30660 Low temperature and salt respo... Lus10035809
[exp]
3.0 0.8259
AT4G00440 Protein of unknown function (D... Lus10014776
[exp]
13.7 0.8078
AT4G27780 ACBP2 acyl-CoA binding protein 2 (.1... Lus10005910
[exp]
14.5 0.8441
AT1G76200 unknown protein Lus10034571
[exp]
16.5 0.8122
AT1G36730 Translation initiation factor ... Lus10000448
[exp]
19.3 0.8011
AT1G16890 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 1... Lus10017654
[exp]
19.4 0.7939
AT1G59650 CW14 Protein of unknown function (D... Lus10010740
[exp]
19.9 0.7958
AT3G56490 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BIN... Lus10035409
[exp]
21.2 0.8445
AT1G16890 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 1... Lus10033611
[exp]
21.6 0.7684

Lus10039920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.