Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19115 79 / 3e-18 unknown protein AT1G17400 63 / 2e-11 unknown protein AT1G72490 51 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027660 [exp] 431 / 8e-156 AT1G17400 81 / 5e-19 unknown protein Lus10000079 [exp] 168 / 6e-54 ND 40 / 2e-05 Lus10015679 [exp] 74 / 3e-15 AT1G72490 239 / 1e-76 unknown protein Lus10037689 [exp] 72 / 1e-14 AT1G72490 246 / 9e-81 unknown protein Lus10013160 [exp] 57 / 3e-09 AT1G72490 202 / 1e-63 unknown protein Lus10008123 [exp] 53 / 6e-08 AT1G72490 200 / 2e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140100 [exp] 119 / 7e-33 AT1G72490 143 / 2e-41 unknown protein Potri.001G166700 [exp] 73 / 3e-15 AT1G72490 269 / 2e-90 unknown protein Potri.003G068300 [exp] 70 / 4e-14 AT1G72490 279 / 2e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039921 pacid=23173530 polypeptide=Lus10039921 locus=Lus10039921.g ID=Lus10039921.BGIv1.0 annot-version=v1.0 ATGAAGTTACTGGCTTGGATGCAACAGAAGCTTGGTGCAAGAAATGGCAACAAGAAGCAAAACCAAAATGCTTCAGCCCTACACTTTGATTATGTGGAAC CAGAAGCTCCAAAAGAAGAAATCCGCGACTGGCCTCACGAGTTGCTTACAATAGGAACGTTAGGATCTAATTGCACCGCTGGTGTTCCCGAGTCGTTGAA AGAGGAAATCCTGACGAATACCATCAATTGTCACGATGACGACGGCATTGAGAGCAAGACGACATTGTCTTTTCCAGGAAAAGTGAAAGGGAAAGACCTG CTTCCTGATCATCAGCAGCACCCAAACAATATCAAGATCAACAAGAAGTCGTTATCGTTTCTTTTGAACAAGGCATTCGTATGCAACGGAGGATTCAGCG CTCCTCCTTCTCCTCGTGGCTTGACGACAACAGATCAACTGCCAACCGACTCCGCAATGGAAAAGATACTCAAGTCAATCCTAAACAAGAAGATATATCC CCAAAACCCTGCACATCCAACAGCACTGTCTAGGAAAATGTACTTGGAAAACAGACATAAGAAGAAGAAGCAATTACAGTCCCCAGAAATCGATCTTCAA TCAGACTCTGGCGACTATCACGACAAGCTGCAGCAGCAGACAGGTGATGAAGGAAGTAAATGGGACAAAACAGATTCTGAATGTGAGCAGTCATGCTTGC CCTGA
AA sequence Show only first row Show all	>Lus10039921 pacid=23173530 polypeptide=Lus10039921 locus=Lus10039921.g ID=Lus10039921.BGIv1.0 annot-version=v1.0 MKLLAWMQQKLGARNGNKKQNQNASALHFDYVEPEAPKEEIRDWPHELLTIGTLGSNCTAGVPESLKEEILTNTINCHDDDGIESKTTLSFPGKVKGKDL LPDHQQHPNNIKINKKSLSFLLNKAFVCNGGFSAPPSPRGLTTTDQLPTDSAMEKILKSILNKKIYPQNPAHPTALSRKMYLENRHKKKKQLQSPEIDLQ SDSGDYHDKLQQQTGDEGSKWDKTDSECEQSCLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17400			unknown protein		Lus10039921 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	6.0	0.9544
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	7.3	0.9270
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	9.6	0.9496
					Lus10012107 [exp]	12.0	0.7948
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	12.5	0.9459
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	12.6	0.8626
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	13.9	0.8822
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	14.5	0.9396
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	14.8	0.9424
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	16.1	0.8820

Compare expression of checked genes

Lus10039921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.