Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43230 662 / 0 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G29800 390 / 1e-131 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT4G33240 56 / 6e-08 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT1G20110 54 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G61690 50 / 3e-06 phosphoinositide binding (.1) AT1G69710 50 / 4e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G14270 49 / 9e-06 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G14368 45 / 0.0001 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 45 / 0.0002 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 44 / 0.0004 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027659 [exp] 956 / 0 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10007320 [exp] 355 / 1e-117 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10029271 [exp] 354 / 4e-117 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10013571 [exp] 59 / 5e-09 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017277 [exp] 59 / 5e-09 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10038129 [exp] 54 / 2e-07 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 54 / 3e-07 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038127 [exp] 52 / 8e-07 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10018391 [exp] 52 / 1e-06 AT1G61690 838 / 0.0 phosphoinositide binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135800 [exp] 670 / 0 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.018G064200 [exp] 669 / 0 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.004G062500 [exp] 397 / 5e-134 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G071900 [exp] 384 / 4e-129 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 382 / 3e-128 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.002G018900 [exp] 56 / 4e-08 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G242700 [exp] 55 / 8e-08 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G072300 [exp] 52 / 1e-06 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G032200 [exp] 51 / 1e-06 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.001G163200 [exp] 49 / 1e-05 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04366 [flax] [poplar] Ysc84 Las17-binding protein actin regulator CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger
Representative CDS sequence Show only first row Show all	>Lus10039922 pacid=23173462 polypeptide=Lus10039922 locus=Lus10039922.g ID=Lus10039922.BGIv1.0 annot-version=v1.0 ATGTGCACTTCTGATCGACAAACTGCTTACTCTACGTTGTCTACTATGGAAAAAGAGAACAAAATGTATCCTTGTACTGATGACTATGCTGATGATGCCT GGATCTCTGGAGAAGATATGGGTTCTCATCAGTTAGGCTCAAAATCTTCTGAAGAAGAATCACATTTTCCATTACGGTATGATTCCGAAGAGTTTGTCGA TGATGGAAATGATTCAAGCGGTGAACCTTGGAGCCCTGTGCAAACTTCTAGAACTCCAGAGGTCAATTTGAAAAATGTGTTGGGTGGGCTATTTGCTATT TTAACTGGAAGGAACAAGGGGTCTGGCCTTTCCACAATTCCACAACTTCCGAGTTCAAATGTTTCTTTTCTTGGGTCTGGAACTAACGGCGACACAGTCT TGCATTCCTCCGTATATATACCGAGTGCTCCACCACTCCTCGAGCCTGCCGGCTTCAATTACAGTGTATACAAGAATGTTTTGGAAGCTGACCCTCCTGA CTGGCTTCCTGATAGTTCTACAACAGTTTGCATGCAGTGCACTACTCCATTCACCGCTATAACTCGTGGAACGGATCATTGCCGGTTTTGTGGTGGAATC TTCTGTAGAGTATGTAGCAAAGGAAGGTGTCTGTTGCCTGTTAAGTTTAGGGAGCGGAACCCGCAAAGGGTTTGTGATGCCTGCTATGACCGGCTTGACC CTCTGCAAGGTATTCTTATAAACTCCATTAGCAATGCTATGCAAGTGGCAAAGCATGATGTAATGGACTGGACATCTGCAAGGGGTTGGCTGAATCTTCC AGTTGGTCTATCCATGGAACATGAGATATACAAATCATCAAATATATTGAGAAGCTATTGCCAGATTGCAAAGATGAATCCGGACAAATCCATACCTCAA GCAGTGTTGAAGGGGGCTAGAGGCCTGGCTATTCTGACAGTTGCCAAAGCAGGTGTTATAGTTGCTTACAAACTTGGAACTGGTCTAGTTATTGCTCGAA GGTCAGATGGAACATGGTCTGCCCCATCTGCAATTTGCTCTGTTGGATTAGGATGGGGTGCTCAGGTTGGAGGTGAGCTCATGGACTTTATAATTGTGCT TCGTGACCTGAAGGCCGTGAAGACATTTTCCAGCCGAATGCATTTCTCTCTTGGTGCTGGTTGTAGTGCTGCAGCAGGGCCTATTGGGAGGGTTGTGGAA GCTGATCTTAGGGCTGGAGATAGAGGTTCTGGCATGTGCTACACATACAGTTGCAGTAAAGGTGCATTTGTTGGTGTGTCGCTTGAAGGAAATGTAGTAA CGACAAGGATGGATGCAAATCTCAACTTCTATGGCGATCCTTATTTGACAACAGCAGACATTCTACTTGGGAATGTGGAGAGACCAAGAGCTGCTGGAAC GTTGTATATGGCCCTTAATGAACTCTATCGCAACCTTTAG
AA sequence Show only first row Show all	>Lus10039922 pacid=23173462 polypeptide=Lus10039922 locus=Lus10039922.g ID=Lus10039922.BGIv1.0 annot-version=v1.0 MCTSDRQTAYSTLSTMEKENKMYPCTDDYADDAWISGEDMGSHQLGSKSSEEESHFPLRYDSEEFVDDGNDSSGEPWSPVQTSRTPEVNLKNVLGGLFAI LTGRNKGSGLSTIPQLPSSNVSFLGSGTNGDTVLHSSVYIPSAPPLLEPAGFNYSVYKNVLEADPPDWLPDSSTTVCMQCTTPFTAITRGTDHCRFCGGI FCRVCSKGRCLLPVKFRERNPQRVCDACYDRLDPLQGILINSISNAMQVAKHDVMDWTSARGWLNLPVGLSMEHEIYKSSNILRSYCQIAKMNPDKSIPQ AVLKGARGLAILTVAKAGVIVAYKLGTGLVIARRSDGTWSAPSAICSVGLGWGAQVGGELMDFIIVLRDLKAVKTFSSRMHFSLGAGCSAAAGPIGRVVE ADLRAGDRGSGMCYTYSCSKGAFVGVSLEGNVVTTRMDANLNFYGDPYLTTADILLGNVERPRAAGTLYMALNELYRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	3.2	0.9327
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	3.5	0.9315
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	7.5	0.9393
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	9.0	0.9319
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	9.2	0.9276
AT5G35690			unknown protein		Lus10000922 [exp]	12.6	0.8841
AT5G40670			PQ-loop repeat family protein ...		Lus10032114 [exp]	13.7	0.8881
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	20.0	0.9070
AT2G31130			unknown protein		Lus10033615 [exp]	22.3	0.8577
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	23.0	0.8783

Compare expression of checked genes

Lus10039922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.