Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66852 93 / 6e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G16230 97 / 3e-24 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 97 / 4e-24 O-Glycosyl hydrolases family 17 protein (.1) AT1G66855 90 / 6e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G63225 89 / 1e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G63240 90 / 2e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G66870 89 / 3e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G30933 89 / 4e-23 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT4G09462 88 / 4e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09467 85 / 6e-22 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012080 [exp] 116 / 7e-31 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032719 [exp] 105 / 2e-27 AT2G16230 430 / 4e-149 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 100 / 3e-25 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 98 / 3e-24 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 97 / 5e-24 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040294 [exp] 97 / 5e-24 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 96 / 1e-23 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005459 [exp] 90 / 6e-22 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10001516 [exp] 89 / 2e-21 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153800 [exp] 110 / 7e-29 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 109 / 1e-28 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 100 / 3e-25 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 100 / 3e-25 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 99 / 6e-25 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 99 / 2e-24 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 93 / 1e-22 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G351600 [exp] 87 / 1e-22 AT1G78520 119 / 9e-36 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.014G114500 [exp] 84 / 4e-21 AT1G66870 96 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G099000 [exp] 82 / 5e-21 AT1G78520 133 / 4e-42 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10039923 pacid=23173523 polypeptide=Lus10039923 locus=Lus10039923.g ID=Lus10039923.BGIv1.0 annot-version=v1.0 ATGGCAAAGGTTGGGGAAATGGGATTGTTTGGAAGGTCGTCTCTTTCTGTTTCAAGTTACAGTGAGGCGGAGTACGGGGCGGACATGCTTGCCGCCGTCC AGGAGGGGGTAGTGCATGGAGTCGTTGATTTTAGCGGGCTCCTTGAGGGCGACGGCCGCGTCGAGGGCCTTGTTGACGGAATTGGCCTTGCGGAGCATGT GCGACTTGAAATCGAAGATGCACAAGGGAAACGTTCTTGGTGTGTGCCCAAACAAGGAGTGGCAGATGCGCAATTACAAGCAAATCTTGACTATGTATGT GGACTTCCGGATATGGACTGTAGCCCAATCCAACCAGGAGGCCCATGTTACGAGCCCAACACAGTGGCTTCTCATGCAGCATTTGCCATGAATCTCTTTT TCCAAAATCATGGTACAAATCATGATTGTGAGTTCTCCGACACAGCCATCGTTACAAACATGGATCCTAGTAGGTCTACTTAA
AA sequence Show only first row Show all	>Lus10039923 pacid=23173523 polypeptide=Lus10039923 locus=Lus10039923.g ID=Lus10039923.BGIv1.0 annot-version=v1.0 MAKVGEMGLFGRSSLSVSSYSEAEYGADMLAAVQEGVVHGVVDFSGLLEGDGRVEGLVDGIGLAEHVRLEIEDAQGKRSWCVPKQGVADAQLQANLDYVC GLPDMDCSPIQPGGPCYEPNTVASHAAFAMNLFFQNHGTNHDCEFSDTAIVTNMDPSRST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34480			O-Glycosyl hydrolases family 1...		Lus10039923 [exp]	0	1
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	10.3	0.6230
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	16.6	0.6067
AT1G05270			TraB family protein (.1)		Lus10038420 [exp]	20.0	0.4832
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	24.5	0.6009
					Lus10019981 [exp]	28.1	0.5811
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	31.7	0.5805
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	33.5	0.5675
					Lus10028295 [exp]	35.5	0.5798
					Lus10013963 [exp]	41.7	0.5719
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	49.3	0.5645

Compare expression of checked genes

Lus10039923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.