Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43240 977 / 0 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027658 [exp] 1458 / 0 AT3G43240 1001 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064500 [exp] 1180 / 0 AT3G43240 1029 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1) Potri.006G135500 [exp] 1173 / 0 AT3G43240 1017 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10039924 pacid=23173455 polypeptide=Lus10039924 locus=Lus10039924.g ID=Lus10039924.BGIv1.0 annot-version=v1.0 ATGATGTTTCATGCTCAAGGTTCTTCAAGGAATCATTGCAGTCTCCTTGCTGTTTTCTGTGGCTCAACGTCTGATTGCGATTACAAGCGTAATCACTCTC TATCACCCTCTGATGATCTTGTACCCAGATACCCTATTCCACAGCTTTCCTCTTCAGGGCGTCTTGAGGTTCAGGTACTGAATAATCCAAGTGTTAACGG CTTCAGGCAGGCACTTCAGTCGTTTGAGCCTAACATTGTGTATCTGCAAGGAGAGCGAACTGAATATAGTGAAGAAGTTGGCTCCCTGAGATGGGGAGAT GTTGACTTGTCCTATCCAGAAGCCTTATGCGACCTCTTCGGTTCGACATTGCCTGGCACCGTGTATTTGGAGACCGCAAAAGGTGAAGAGTTAGCTGAGG CACTTTATTCTAAGGGAGTTCCCTATGTCATATATTGGAAGAGTACATTCTCATATTATGCTGCTTTGCACTTCCGGCAAGCACTATGCTATGTGGTGCA AAGTTCGTGCAGTCACATATGTGATGCATTTCAATTGGCTCACGCATCATTCAGGCTTTATTGTTCACCGGACAGTAATGGGTTATCTTCAAATAGCCAG AAACCCAGCAGTAAACCTGGACCCCGCTTGCTTGGAGAGCCTCCCAAGATTGATATTACTATACCTGAGAATGATATTCCAGATGAAGAAGGCTCCTCTG ACAATCTTCCTGCGATAAAAATATATGATGATGATGTGACTTTACGATTTCTTGTTTGTGGCTTATCCGGCACACTGGATTCATGTTTATTAGGATCTCT GGAGGATGGGCTCAATGCTTTGTTGAATATTGAGATTCGTGGTAGTAAGCTTCACAATAGGACCAGTGCACCACCTCCTCCACTTCAGGCAGGAACATTT TCTCGTGGTGTTGTAACCATGCGGTGTGATTTGTCAACTTGTAGTTCTTCTCATATTTCACTTCTAGTCTCTGGTAGTGCGCAGACGTGCTTCAATGATC AGTTTTTGGAAAATCATATTAAGCAAGAAATTATTCAGAATAGTCAGCTAGTCCATGCCTTGCCGACATCTGAGAAAATTATAGTATCTACTGTGCCGAG AAAATCTACTTCCATAGCTTGCGGGGCAAGTGTTTTTGAAGTTAGCATGAAAGTTCCTACATGGGCTTCACAGGTTCTGCGCCAACTGGCTCCAGATGCA TCTTATCGAAGCTTAGTTATGCTGGGAATAGCTAGCATTCACGGATTGTCAGTTGCTTCTTTTGAAAAGGATGATGCAGATCGCCTGCTTTTCTTTTGTG CAAAACAAGGACAAGAGTTTCAATTAAATAACCCCCTGTTGACTAGGCCTCCTAGCTGGTTGATAACTCCGGCACCCAGTCGAAAAATACACGATCTATC CTGGGAAACAAGACCGTTCTCTGATGCGATAGGTGAGAAGGAGGGTAATATTAGACGGAAACTGAATGTTGCAGCAATGAGGCCCATTCCTCATACTCGC CGTCATAAGATGCTCCCTTTCTCTGGGTTATCTGAGGCTGACCGATATGATGGAGAACAAGTCAAACCCATGATACCTGTTGCGGCCCCGAAGCATAGTT CTGCTGGTTCCGTTCCTGTTACGCACAGGAAAATGACAAGTTCTTATCAGGCTCAGCAGGTCATCTCTCTGAATCCACTCCCTCTTAAAAAACATGGTTG TGGGAGAGCGCCTATACATGCATGCACTGAGGAGGAGTTCTTGCGAGATGTGATGCAGTTCTTGATTCTTCGTGGGCATACTAGACTTGTTCCTCAAGGT GGGCTTCCGGAGTTTCCTGATGCCATTCTCAACGCTAAACGGCTTGACCTATTCAACCTGTATCGGGAGGTTGTTTCAAGAGGTGGGTTTCATGTTGGAA ATGGAATCAACTGGAAGGGGCAGGTTTTCTCGAAGATGCGCAATCATACTCTCACAAACCGAATGACGGGTGTTGGGAACACGCTGAAAAGGCATTATGA AACTTATCTTCTAGAATACGAGTTGGCGCATGAAGACGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGCGCAGCGGGAGACTGGGTGAATTGTGGT ATATGCGGGGAGTGGGCTCACTTTGGTTGTGACAGGCGCCAGGGACTTGGCGCTTTTAAGGACTATGCTAAAACAGATGGACTGGAGTACATTTGTCCAC ATTGTAGCGTTACAAATTTCAAGAAGAAATCCCAGAAAACGGCAAATGGGTTTTGA
AA sequence Show only first row Show all	>Lus10039924 pacid=23173455 polypeptide=Lus10039924 locus=Lus10039924.g ID=Lus10039924.BGIv1.0 annot-version=v1.0 MMFHAQGSSRNHCSLLAVFCGSTSDCDYKRNHSLSPSDDLVPRYPIPQLSSSGRLEVQVLNNPSVNGFRQALQSFEPNIVYLQGERTEYSEEVGSLRWGD VDLSYPEALCDLFGSTLPGTVYLETAKGEELAEALYSKGVPYVIYWKSTFSYYAALHFRQALCYVVQSSCSHICDAFQLAHASFRLYCSPDSNGLSSNSQ KPSSKPGPRLLGEPPKIDITIPENDIPDEEGSSDNLPAIKIYDDDVTLRFLVCGLSGTLDSCLLGSLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGTF SRGVVTMRCDLSTCSSSHISLLVSGSAQTCFNDQFLENHIKQEIIQNSQLVHALPTSEKIIVSTVPRKSTSIACGASVFEVSMKVPTWASQVLRQLAPDA SYRSLVMLGIASIHGLSVASFEKDDADRLLFFCAKQGQEFQLNNPLLTRPPSWLITPAPSRKIHDLSWETRPFSDAIGEKEGNIRRKLNVAAMRPIPHTR RHKMLPFSGLSEADRYDGEQVKPMIPVAAPKHSSAGSVPVTHRKMTSSYQAQQVISLNPLPLKKHGCGRAPIHACTEEEFLRDVMQFLILRGHTRLVPQG GLPEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCG ICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKSQKTANGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	0	1
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	2.0	0.8239
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10002966 [exp]	5.7	0.6706
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	7.3	0.7971
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	7.5	0.7676
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	8.9	0.7660
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	10.7	0.7540
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	13.0	0.7191
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	13.3	0.6418
AT3G45400			exostosin family protein (.1)		Lus10003870 [exp]	14.3	0.6955
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	15.0	0.6961

Compare expression of checked genes

Lus10039924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.