Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 253 / 2e-79 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 245 / 6e-77 Aluminium activated malate transporter family protein (.1) AT1G25480 196 / 2e-58 Aluminium activated malate transporter family protein (.1) AT1G68600 173 / 7e-50 Aluminium activated malate transporter family protein (.1) AT2G17470 171 / 4e-49 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT4G00910 62 / 1e-10 Aluminium activated malate transporter family protein (.1) AT5G46610 59 / 1e-09 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 56 / 1e-08 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT1G08430 53 / 1e-07 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT5G46600 49 / 2e-06 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027657 [exp] 510 / 6e-180 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10035037 [exp] 187 / 2e-55 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10034301 [exp] 182 / 8e-53 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 179 / 1e-51 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10024710 [exp] 96 / 4e-22 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10004556 [exp] 65 / 2e-11 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 65 / 2e-11 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 59 / 1e-09 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10033223 [exp] 57 / 6e-09 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053400 [exp] 342 / 2e-114 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 231 / 1e-71 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 226 / 1e-69 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G097300 [exp] 97 / 2e-22 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 92 / 1e-20 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 68 / 1e-12 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.002G174600 [exp] 56 / 2e-08 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 55 / 3e-08 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 55 / 3e-08 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 54 / 9e-08 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10039925 pacid=23173478 polypeptide=Lus10039925 locus=Lus10039925.g ID=Lus10039925.BGIv1.0 annot-version=v1.0 ATGAGTTTCGCAGTGTGGGAACCTCCTCACGGGCCGTACAAGTCAAGTCGATATCCATGGAGTAATTATGTCAAAGTGAGCGGTGCACTTAGGCATTGTG CATTCATGGTAATGGCACTGCATGGATGTATACTCTCAGAAATACAGGTGATTGTTATTCACCTTAACGCCGGTTGGGTTTTATGTGTTGATAGTTTAGA TGTGTATAAGACTTCTAATTTGAAAGTGCAGGCTCCAGCTGAACGAAGACAGGTGTTCCGGCAGGAGTTACAAAGAGTAGGAGTTGAAGGGGCTAAAGTG TTGCGGCTCCTTGGTAACAAAATGAAGAACCTTGAGAAGCTAGGTCCAATAGACGTTCTTTACGAAGTGCATGAAGCAGCGGAAGAGCTACAAACCAAGG TGGACAAGAAATCATATCTCCTTGTAAATTCAGGATCTTGGGAAATCGGGACATGGGAGAAGGACATGGGAGAGCCACAGGATATGTTGACTTTCGATGA TGACGTGGATAATCAATTTGTTGAACACAAGGCACACAGTGAAGCTCTGCTAAATTTGAGATCGCTGACTATACCAAAAGGGTGGGATGATAGAGTACCG CATGTTCCTCTAGCCTCAAACTCAACCCTGCCAACAGGTTTTAGTTCACAGGATGCATATGCAAACCAGATATCTTGGCCGAGACGAAATTCATTCGCTG CTGCTGCTTCCTTGCCGCAGATAGAAGAATCCAAGACTTTTGAAAGTGCAAGTGCGTTGTCACTGGCAACATTCACGTCACTTTTGACGGAGTTTGTGGC AAGGCTGCAAAACATAGTAGACGCGTATCAGGAGCTAAGCGACAAGGCAAACTTCAAGGATCCCGTGGATGAACTGGTTGGAGAGCTGGATGGAGTTTGG ACCAGATTAGTTAGACGCATGAAGTTGTCTCTTGGAAAGTAA
AA sequence Show only first row Show all	>Lus10039925 pacid=23173478 polypeptide=Lus10039925 locus=Lus10039925.g ID=Lus10039925.BGIv1.0 annot-version=v1.0 MSFAVWEPPHGPYKSSRYPWSNYVKVSGALRHCAFMVMALHGCILSEIQVIVIHLNAGWVLCVDSLDVYKTSNLKVQAPAERRQVFRQELQRVGVEGAKV LRLLGNKMKNLEKLGPIDVLYEVHEAAEELQTKVDKKSYLLVNSGSWEIGTWEKDMGEPQDMLTFDDDVDNQFVEHKAHSEALLNLRSLTIPKGWDDRVP HVPLASNSTLPTGFSSQDAYANQISWPRRNSFAAAASLPQIEESKTFESASALSLATFTSLLTEFVARLQNIVDAYQELSDKANFKDPVDELVGELDGVW TRLVRRMKLSLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	0	1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	1.0	0.9029
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	1.4	0.8998
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	4.5	0.8624
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	6.2	0.8372
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	6.9	0.8597
AT5G18130			unknown protein		Lus10005702 [exp]	7.7	0.8240
AT1G56423			unknown protein		Lus10029844 [exp]	8.0	0.8649
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	8.1	0.8702
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	8.4	0.8565
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	11.2	0.8421

Compare expression of checked genes

Lus10039925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.