Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 366 / 2e-123 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 327 / 1e-108 Aluminium activated malate transporter family protein (.1) AT1G25480 325 / 3e-108 Aluminium activated malate transporter family protein (.1) AT1G68600 298 / 7e-98 Aluminium activated malate transporter family protein (.1) AT2G17470 295 / 1e-96 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT4G17970 169 / 5e-48 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 160 / 5e-45 Aluminium activated malate transporter family protein (.1.2.3) AT4G00910 148 / 7e-41 Aluminium activated malate transporter family protein (.1) AT5G46600 147 / 2e-40 Aluminium activated malate transporter family protein (.1) AT1G08440 144 / 3e-39 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027657 [exp] 559 / 0 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 315 / 4e-104 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 300 / 3e-98 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 171 / 9e-49 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 168 / 6e-48 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 162 / 1e-45 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 159 / 8e-45 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 158 / 2e-44 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10024710 [exp] 154 / 1e-43 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053400 [exp] 421 / 2e-145 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 336 / 3e-112 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.010G127400 [exp] 312 / 3e-103 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 182 / 2e-53 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.003G134100 [exp] 167 / 1e-47 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 162 / 1e-45 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.009G017800 [exp] 159 / 6e-45 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 156 / 5e-44 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 156 / 9e-44 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 155 / 2e-43 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10039926 pacid=23173391 polypeptide=Lus10039926 locus=Lus10039926.g ID=Lus10039926.BGIv1.0 annot-version=v1.0 ATGACTCTAAACGCGAAAATGGGGTCCTTCCGGTACGGCCTTGCCGAGAAGAGGGAAAAATTGCTGTCTATGAAGGAACACTCAGTGCTTGGTTTTGCCA ACATTGACAAAGAAGATGAACCTAGGAGTTTCTCTACATACAGGTTTCTTTCGGGTAAAATTGTCGACTTCTGCAGAATGATCCAAGACTTTTCTCGCAT GGCTTATCAGATGGGCCGCTCAGATCCCAGAAAGATCGTTTTTTCTGCCAAGGTCGGTTTGACTTTGATGACTATATCTTTGCTAATCTACTGGAAAGAG CCTATGAAGGAGTTGAGTCAGCACTCTGTTTGGGCTGTTCTTACCGTGGTGGTTGTCTTTGAGTTCAGCATAGGCGCCACACTTAGCAAAGGATTCAACC GTGGACTAGGAACTCTGTCAGCTGGAGGACTTGCTCTCGGAATGGCCGAATTGTCTCAATTGACTGGAGAATGGGAAGAAGAATTTATTGTTATAAGCAT CTTCATTATGGGGTTCTGTGCAACGTATGCAAAATTGTTACCACCGCTGAAGCCTTATGAGTATGGCTTCCGGGTATACCTGATAACGTATTGCATGGTA ATGATATCCGGGTATCAGACTCGTGAATTTATCCATACCGCTGTTACGCGATTTCTGCTTATTGCATTGGGTGCGGGTGTCTGTTTAGTAATAAACATAT TCATTTATCCTATTTGGGCTGGGGAAGACTTGCACAACTTGGTGGTGAAGAATTTCATGAGTGTGGCGACTTCTTTGGAAGGTTGCGTAGAGGGGTACCT TAACTGTGTTGAATATGAAAGAATCCCATCGAAAATCCTCACTTACCAAGCTTCTGATGACCCATTGTATAGAGGCTACAGATCGGTTGTAGAATCGACA AGCCAAGAAGATACACTGGGGCTGACAGTTTGA
AA sequence Show only first row Show all	>Lus10039926 pacid=23173391 polypeptide=Lus10039926 locus=Lus10039926.g ID=Lus10039926.BGIv1.0 annot-version=v1.0 MTLNAKMGSFRYGLAEKREKLLSMKEHSVLGFANIDKEDEPRSFSTYRFLSGKIVDFCRMIQDFSRMAYQMGRSDPRKIVFSAKVGLTLMTISLLIYWKE PMKELSQHSVWAVLTVVVVFEFSIGATLSKGFNRGLGTLSAGGLALGMAELSQLTGEWEEEFIVISIFIMGFCATYAKLLPPLKPYEYGFRVYLITYCMV MISGYQTREFIHTAVTRFLLIALGAGVCLVINIFIYPIWAGEDLHNLVVKNFMSVATSLEGCVEGYLNCVEYERIPSKILTYQASDDPLYRGYRSVVEST SQEDTLGLTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	0	1
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	1.4	0.8772
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	2.2	0.8666
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	3.6	0.8787
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	4.0	0.8676
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	4.2	0.8718
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	4.9	0.8576
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	4.9	0.8622
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	6.2	0.8439
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	6.6	0.8477
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10009213 [exp]	9.8	0.8107

Compare expression of checked genes

Lus10039926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.