Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26450 570 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 569 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 445 / 9e-148 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 442 / 2e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 410 / 3e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 395 / 1e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 386 / 4e-127 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 374 / 3e-122 RHS12 root hair specific 12 (.1) AT1G53840 373 / 1e-121 ATPME1 pectin methylesterase 1 (.1) AT5G53370 370 / 1e-120 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027656 [exp] 848 / 0 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 436 / 3e-146 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 435 / 4e-146 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 430 / 1e-143 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 422 / 4e-141 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 419 / 8e-140 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 412 / 4e-137 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 395 / 5e-131 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 368 / 5e-120 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051200 [exp] 701 / 0 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 679 / 0 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 472 / 1e-160 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 471 / 3e-160 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 447 / 4e-151 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 440 / 3e-148 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 433 / 4e-145 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 428 / 2e-143 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 424 / 8e-142 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 403 / 1e-133 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10039927 pacid=23173545 polypeptide=Lus10039927 locus=Lus10039927.g ID=Lus10039927.BGIv1.0 annot-version=v1.0 ATGGTTTTCCAAGATTTTGATCAAATTACAGAGAGGAGGAGGTTGGAGAGACAACGCCAATTCCGCAAGAAACTTATCATCGCTTCACTTGTTGCTCTTA TCTGTATTTCTCTCATCGTCGCTTGTGCTTATGCATTCGTTGGCCAAGAAATGAAGAACAGTAAGAACAAAGATGTTGATGATCATAAAAAGGCTACAAA GACCGGCGATGAAGAAAATCCTCCACAGAAACCCACCAAGCCGACCCCACAAGACGACGACAAAGAAAACGGCGGCGACGATAAAAAACAGAGCAGTACC AAAGATATATCCAACGTACAGAAAATGGTGAAACAAGTTTGCAATTCTTCAACGTATCAAACAAAGTGTCAGACAACATACGAGGATGCAATCAAGAAGA ACTCATCCGTCACCGCCAACGACTTGATCAAAATTTCTATTCAGGCAGTGAGCACGGAGATTCAAAATGTAATGACCAAAATCAACAGTTTGAAATTCGA CGATCCCAAGGCTCAAGGAGCGTTTGAAGATTGCAAGAAGCTTATCGGTTACGCCAAAGACGAGTTAAACGACTCGATTTCGACAGCCGGTGAAAACGAC CTGATTAAAAACTTGGCCAAGAACGGACCTGAGTTGAGGAACTGGTTGAGTGCGGTGATGTCGTACCAGCAGACTTGCATCGACGGATTTCCTGACGGGA AGGCCAAGACCGAAATGGAGAAGAATTTCAATTCGTCCAAGGAGTTCACGAGTAATTCGCTGGCAGTTGTTGCCACGTCGGATTCGTTTCTCTCGGCGAT TAACAACATCATTCATGGTCGTAGACTATTGGGCAATGAGGAGGATAATGATGGGGATGATCAGTTTCCAGGTTGGGTTAGTCATGAGGATAGGAGGATG TTGAAAGGTGCTGCTACTGCTGATAAACCAAAGCCGAATAAGGTCGTGGCTAAAGATGGGAGTGGAGATTTCAAAACTATTAATGAAGCTATCAAAGCCA TACCTGAGAAATATGATGGAAGGTACATCATTTATGTAAAGCAAGGAGTATACGAAGAGAGTGTGACAATAGAAAAGAGGATGGAGAACGTTACTATCTA TGGTGATGGATCGCAGAAAAGCATTGTTACTGGAAGCAAGAATTTTGCTGATGGTGTAAGGACTTTAGAGACTGCAACCTTTGTTGTACTAGCGAATGGG TTTGTGAGCCAAGCAATGGGGTATAGGAACACAGCCGGGGCATCAAAGCACCAAGCCGTTGCAATACGCGTGCAAGGAGATAAAGCAGTGTTCATAAACT CACGATTCGAAGGATACCAAGACACTCTTTACGCCCAAAACCACCGACATTTCTACAAGAGCTGCGTGATATCCGGCACAGTCGATTTCATATTCGGGGA TGCCGCGGCAGTCTTCCAGAACTGTCTCATCCTGCTAAGGAAGCCGATGGAAAACCAACAAAACACCATTACCGCTCAGGGACGGATGGACAAGTACCAG AGCACAGGGTTCGTGCTCCAGAACTGTAGAATCGAGGCCGACAAGGACTTGGACGGCCCCGCCAAGGACAAAGTGAAGAGCTACCTCGGACGGCCCTGGA GGGATTATTCGAGGACGGTGGTCATGGAATCGACCATCGATATGATCGAGCCGGAAGGGTGGTTGGCTTGGGAAGGCGAGAAAGGACTTAAAACGTTGTA TTATGCCGAGTATGGGAATAAAGGGCCTGATTCCGGTACGGACAAGCGGGTCAAGTGGCCTGGGTTCCACGTCATCAATCGGGACGAGGCGATGAAATTT ACGGTCGTACCCTTCATACAGGGAGACGAATGGGTTGACGAAGCTGGAGCGCAAGTCAAAGTTGGGTTATTTAATTAG
AA sequence Show only first row Show all	>Lus10039927 pacid=23173545 polypeptide=Lus10039927 locus=Lus10039927.g ID=Lus10039927.BGIv1.0 annot-version=v1.0 MVFQDFDQITERRRLERQRQFRKKLIIASLVALICISLIVACAYAFVGQEMKNSKNKDVDDHKKATKTGDEENPPQKPTKPTPQDDDKENGGDDKKQSST KDISNVQKMVKQVCNSSTYQTKCQTTYEDAIKKNSSVTANDLIKISIQAVSTEIQNVMTKINSLKFDDPKAQGAFEDCKKLIGYAKDELNDSISTAGEND LIKNLAKNGPELRNWLSAVMSYQQTCIDGFPDGKAKTEMEKNFNSSKEFTSNSLAVVATSDSFLSAINNIIHGRRLLGNEEDNDGDDQFPGWVSHEDRRM LKGAATADKPKPNKVVAKDGSGDFKTINEAIKAIPEKYDGRYIIYVKQGVYEESVTIEKRMENVTIYGDGSQKSIVTGSKNFADGVRTLETATFVVLANG FVSQAMGYRNTAGASKHQAVAIRVQGDKAVFINSRFEGYQDTLYAQNHRHFYKSCVISGTVDFIFGDAAAVFQNCLILLRKPMENQQNTITAQGRMDKYQ STGFVLQNCRIEADKDLDGPAKDKVKSYLGRPWRDYSRTVVMESTIDMIEPEGWLAWEGEKGLKTLYYAEYGNKGPDSGTDKRVKWPGFHVINRDEAMKF TVVPFIQGDEWVDEAGAQVKVGLFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26450			Plant invertase/pectin methyle...		Lus10039927 [exp]	0	1

Compare expression of checked genes

Lus10039927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.