Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20850 530 / 0 ATRAD51 RAS associated with diabetes protein 51 (.1) AT3G22880 284 / 3e-94 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G57450 84 / 4e-18 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G45280 83 / 1e-17 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT2G28560 82 / 2e-17 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT1G07745 46 / 2e-05 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) AT1G79050 46 / 3e-05 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027654 [exp] 655 / 0 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10039383 [exp] 262 / 2e-85 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10006625 [exp] 261 / 3e-85 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10000790 [exp] 86 / 3e-19 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10023341 [exp] 72 / 1e-13 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 68 / 1e-12 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10004464 [exp] 61 / 3e-10 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10015220 [exp] 57 / 6e-09 AT1G07745 273 / 6e-91 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10026204 [exp] 44 / 0.0001 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135200 [exp] 555 / 0 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.010G081500 [exp] 288 / 7e-96 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.008G158500 [exp] 83 / 5e-19 AT3G22880 238 / 5e-79 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.018G093100 [exp] 75 / 5e-15 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Potri.014G068100 [exp] 72 / 4e-14 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.001G438900 [exp] 42 / 0.0004 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10039928 pacid=23173473 polypeptide=Lus10039928 locus=Lus10039928.g ID=Lus10039928.BGIv1.0 annot-version=v1.0 ATGGAGCCGCAACAGCAGCAAAGAAACCAGAAGTCAGCCAATCATCAACTTGAGCAACGTGCAGAGCACGATGACATTCAACATGGCCCAATCCCCATCG AGCAGCTCCAGGAAGCAGGAATAGCTTCCATAGACGTGAAGAAACTAAAAGATGCCGGTCTATGTACAATTGAGTCAGTTGCATACTCCCCTAGAAAAGA ACTACTTCATATTAAAGGAATCAGTGAAGCTAAAGTTGACAAAATCATTGAAGCAGGCATGGTTCTTCTTGGCCTCTTCCCTTCGGTCATCTTTTGTGGG ATGGAGACAGGATCCATTACTGAGATATATGGTGAATTTCGCTCTGGAAAGACTCAGCTGTGCCACACACTCTGTGTCACCTGCCAACTACCATTAGATC AAGGGGGCGGTGAGGGGAAAGCGATGTACATAGATGCTGAAGGCACATTCAGGCCTCAGAGACTTCTTCAGATAGCAGACAGGTATGGACTCAATGGCGC TGATGTCTTGGAAAATGTGGCATATGCAAGAGCGTATAACACTGATCACCAGTCAAGGCTTCTGCTCGAAGCAGCTTCAATGATGGTGGAAACTAGGCAT CTGATGGATTCCGGACTAGGAACTAAATTTGCACTAATGATAGTCGACAGTGCTACAGCACTATACAGAACAGATTTCTCAGGCAGGGGAGAACTGTCGG CACGACAAATGCATCTTGCTAAGTTCCTGAGGAGCCTACAGAAGTTGGCTGATGAGTTTGGTGTAGCTGTGGTGATTACGAACCAAGTAGTTGCACAGGT GGATGGTTCTGCCCTATTTGCAGGGCCTCAAATCAAGCCTATAGGCGGTAATATCATGGCTCATGCTTCTACGACTAGACTTGCTCTTCGAAAAGGAAGA GGAGAGGAGCGTATCTGTAAAGTGATAAGCTCTCCTTGTTTAGCTGAAGCAGAAGCACGCTTTCAAATTTCCCCTGAAGGAGTAATTGATGCCAATGACT GA
AA sequence Show only first row Show all	>Lus10039928 pacid=23173473 polypeptide=Lus10039928 locus=Lus10039928.g ID=Lus10039928.BGIv1.0 annot-version=v1.0 MEPQQQQRNQKSANHQLEQRAEHDDIQHGPIPIEQLQEAGIASIDVKKLKDAGLCTIESVAYSPRKELLHIKGISEAKVDKIIEAGMVLLGLFPSVIFCG METGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRH LMDSGLGTKFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQIKPIGGNIMAHASTTRLALRKGR GEERICKVISSPCLAEAEARFQISPEGVIDAND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	6.3	0.9276
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	7.1	0.9074
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	8.9	0.9094
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	9.5	0.9119
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	11.3	0.8907
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	13.0	0.9068
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	14.3	0.9145
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	14.8	0.8959
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	15.7	0.8767
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	16.4	0.8919

Compare expression of checked genes

Lus10039928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.