Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19140 352 / 7e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027662 [exp] 573 / 0 AT1G19140 378 / 3e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139800 [exp] 394 / 2e-138 AT1G19140 394 / 1e-138 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08511 [flax] [poplar] COQ9 COQ9
Representative CDS sequence Show only first row Show all	>Lus10039930 pacid=23173468 polypeptide=Lus10039930 locus=Lus10039930.g ID=Lus10039930.BGIv1.0 annot-version=v1.0 ATGTACAGAACGGCAGGGAAACAGCTCCTTCGCGCCTCTATCTGCGTTTCAGGCAGGAATATCCGTCTCCGATTCCCTAACCCACAGACTCTACTTTCTG GCAAAACCTTCTCCACTTCTCCGCAGCCTCCTCATTCCGACCAAAATCAAATCCCTCGCACGTTTGTCAATTCACTCAACTTCACCGAATCGACTGCCTC CGCCTCAGCTTCTTCATCTGCCGGATCGTCGGCATCACCGACGTCTGAGGATGCCCAGCAACTCAGGAGGGAGATTCCGAAAGTTGAGCATCTAGATGAG CAAGCTCGATTGCTTCAAGCCTCTCTCCGTCACGTGTCAAGGCTGGGATGGTCTGAAGATGCATTGATGGCTGGGGCGAGGGATGTTGGCGTCTCGCCTT CAATCGTCGGGTCTTTCCCGAGAAAAGATGCTGCCTTAGTTGAGTATTTCATGGATGATTGCTTGGAGAAGCTTATCGATAAAATTGAGAGTGGAACGGA ATTAAGCAACTTGTCGCCTAGTGAGCGTATCTCCAAACTTATCAGGATTCGTCTGGAAATGCAAGCTCCCTACATATCAAAGTGGCCGCAAGCCCTCAGC ATTCAGGCAAACCCTTTGAACTTACCTACGAGTTTTAAACAGCGAGCTAGCTTGATTGATGAGATTTGGCATACCTCTGGTGATGGTGGAAATAACATGG AGTGGTATGTGAAACGTACTGTCCTTGGGGGAGTATATTCAACTACCGAGATCTATATGTTGACTGATAGTTCCCCAGAGTTCCGGGATACATGGGCATT CTTGGAGGATCGAGTCAGAGATGCGTTTGATCTAAAGAAGACCATTCAAGAGGCAACGTATCTGGCGGAAGCTGTTGGTGCTGGGTTGGGAAACTCATTC CAAGGGTTTATGAAGAAAGTACTTCAGCGGTGA
AA sequence Show only first row Show all	>Lus10039930 pacid=23173468 polypeptide=Lus10039930 locus=Lus10039930.g ID=Lus10039930.BGIv1.0 annot-version=v1.0 MYRTAGKQLLRASICVSGRNIRLRFPNPQTLLSGKTFSTSPQPPHSDQNQIPRTFVNSLNFTESTASASASSSAGSSASPTSEDAQQLRREIPKVEHLDE QARLLQASLRHVSRLGWSEDALMAGARDVGVSPSIVGSFPRKDAALVEYFMDDCLEKLIDKIESGTELSNLSPSERISKLIRIRLEMQAPYISKWPQALS IQANPLNLPTSFKQRASLIDEIWHTSGDGGNNMEWYVKRTVLGGVYSTTEIYMLTDSSPEFRDTWAFLEDRVRDAFDLKKTIQEATYLAEAVGAGLGNSF QGFMKKVLQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19140			unknown protein		Lus10039930 [exp]	0	1
AT1G35430			unknown protein		Lus10001289 [exp]	4.6	0.7887
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	6.0	0.8079
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	7.7	0.7821
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	12.5	0.7932
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	12.7	0.8059
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	13.7	0.8075
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	19.9	0.8014
AT5G10780			unknown protein		Lus10040473 [exp]	20.4	0.7868
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	24.7	0.8039
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	28.1	0.7781

Compare expression of checked genes

Lus10039930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.