Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33250 367 / 2e-130 ATTIF3K1, EIF3K eukaryotic translation initiation factor 3K (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027668 [exp] 477 / 1e-173 AT4G33250 363 / 4e-129 eukaryotic translation initiation factor 3K (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G136500 [exp] 418 / 2e-150 AT4G33250 382 / 2e-136 eukaryotic translation initiation factor 3K (.1) Potri.018G063600 [exp] 401 / 7e-144 AT4G33250 371 / 6e-132 eukaryotic translation initiation factor 3K (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10039931 pacid=23173560 polypeptide=Lus10039931 locus=Lus10039931.g ID=Lus10039931.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAAATTGAGTCTCCGAAACAACAGCCGCAGCAGCAAATCTCGTACACCGTGGAGCAGCTTGTAGCCGTCAATCCCTACAATCCCGACATCC TCCCTGACCTCGAGAACTACGTCAATGAGCAGGTTGCCTCACAAACATACAGCCTAGATGCAAATCTATGCCTTCTTCGCCTTTATCAGTTTGAGCCAGA GCGATTGAGCAGCCAAATTTCTGTGCGCATTTTGGTGAAGGCCCTCATGGCTATGCCAGCTCCAGATTTCAGCCTTTGCCTCTTCTTGATTCCAGAAAGA GTGCAAATGGAGGAGCAGTTCAAGACACTGATTGTCCTCTCTCATTATCTTGAGACTGGGAGGTTTCGTCAGTTCTGGGATGAAGCATCTAAGAGTCGGC ATATTGTTGAAGCTGTACCAGGTTTTGAGCAAGCTATAAGAGACTATGCTGTCCATGTGCTTTCCTTGACCTACCAAAAGGTTCCTAGGACCGTTCTAGC TGAGGCCATCAACATTGAAGGTTTGGCGCTGGACAAGTTCCTTGAACAGCAAGTTGCAGAGAGTGGGTGGGTTGTAGAGAAGGGTCAAGGCAGGGCTCAA GTAATTGCACTGCCGAAAACTGAATTCAATCATCCTGAGCTCAAGAAAAACTCTGGCGATGCTGTCCCGTTGGATCATGTCACTCGCATCTTCCCAATCC TTAGCTGA
AA sequence Show only first row Show all	>Lus10039931 pacid=23173560 polypeptide=Lus10039931 locus=Lus10039931.g ID=Lus10039931.BGIv1.0 annot-version=v1.0 MGREIESPKQQPQQQISYTVEQLVAVNPYNPDILPDLENYVNEQVASQTYSLDANLCLLRLYQFEPERLSSQISVRILVKALMAMPAPDFSLCLFLIPER VQMEEQFKTLIVLSHYLETGRFRQFWDEASKSRHIVEAVPGFEQAIRDYAVHVLSLTYQKVPRTVLAEAINIEGLALDKFLEQQVAESGWVVEKGQGRAQ VIALPKTEFNHPELKKNSGDAVPLDHVTRIFPILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10033532 [exp]	3.5	0.9017
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	3.7	0.9116
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	3.7	0.9255
AT1G15420			unknown protein		Lus10030351 [exp]	4.6	0.9038
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	6.7	0.8885
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	7.1	0.9002
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10005615 [exp]	8.5	0.8968
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	9.5	0.8581
AT5G10745			unknown protein		Lus10026240 [exp]	9.6	0.8662
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	11.2	0.8842

Compare expression of checked genes

Lus10039931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.