Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05840 458 / 1e-165 PAA2 20S proteasome subunit PAA2 (.1.2) AT5G35590 448 / 1e-161 PAA1 proteasome alpha subunit A1 (.1) AT1G16470 144 / 4e-42 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 142 / 4e-41 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT3G51260 136 / 6e-39 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G66140 134 / 3e-38 PAD2 proteasome alpha subunit D2 (.1) AT1G53850 129 / 3e-36 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 129 / 4e-36 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 124 / 3e-34 PAC1 20S proteasome alpha subunit C1 (.1) AT1G47250 121 / 7e-33 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027669 [exp] 496 / 2e-180 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10017135 [exp] 144 / 4e-42 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 143 / 1e-41 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10041890 [exp] 130 / 1e-36 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10042145 [exp] 128 / 8e-36 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10018318 [exp] 131 / 2e-34 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004235 [exp] 122 / 6e-34 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10037454 [exp] 127 / 4e-33 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 127 / 5e-33 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140400 [exp] 472 / 3e-171 AT2G05840 463 / 7e-168 20S proteasome subunit PAA2 (.1.2) Potri.016G139600 [exp] 463 / 2e-167 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2) Potri.006G110800 [exp] 460 / 3e-166 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.012G123550 [exp] 145 / 1e-42 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 145 / 1e-42 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.009G133800 [exp] 135 / 1e-38 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 133 / 1e-37 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.003G072500 [exp] 130 / 9e-37 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.006G008800 [exp] 125 / 1e-34 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.001G162900 [exp] 125 / 1e-34 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10039932 pacid=23173461 polypeptide=Lus10039932 locus=Lus10039932.g ID=Lus10039932.BGIv1.0 annot-version=v1.0 ATGAGCCGAGGAAGTGGTGGTGGCTACGATCGCCACATTACAATCTTCTCGCCGGAAGGTCGCCTCTTCCAAGTCGCATGCAGCACCCTCTACAGAGCAG CAAAGCTTTATAATTTTAAACGCCCTCTTCCGTCGCGATTTGCAGAGTACGCTTTCAAGGCAGTAAAGGCGGCGACTGTCACTTCGATTGGCGTTCGAGG AAAGGACTCCGTTTGCGTTGTCACGCAGAAGAAAGTTCCGGACAAGCTTCTTGATCAGACAAGCGTCACCCACCTTTTCCCTATCACCCAATATCTTGGA TTGCTCGCTACGGGCATGACAGCTGATGCAAGGACATTGGTTCAACAAGCAAGAAATGAAGCTGCTGAGTTCCGATTCAAATATGGCTATGAAATGCCTG TCGATGTTTTGTCAAAATGGATTGCTGACAAGTCACAAGTTTACACACAGCATGCCTACATGAGACCACTTGGAGTAGTTGCCATGGTTCTGGGTATCGA TGATGAGAAGGGGCCTCAGCTTTATAAATGTGACCCAGCTGGGCACTTTTATGGTCACAAGGCTACAAGTGCTGGGTTGAAAGAACAGGAGGCTATCAAT TTTCTTGAGAAGAAAATGAAAAATGACCCTGCTTTCTCCTATGAGGAAACAGTGCAGACTGCGATTTCTGCTTTGCAATCTGTTCTGCAAGAAGACTTTA AGGCCACTGAGATCGAGGTGGGAGTGGTGAGAGCAGACAAGCCAGTTTTCAGGGTTTTGTCCACTGAAGAGATAGATGAACATTTGACTGCCATTAGTGA GCGCGACTGA
AA sequence Show only first row Show all	>Lus10039932 pacid=23173461 polypeptide=Lus10039932 locus=Lus10039932.g ID=Lus10039932.BGIv1.0 annot-version=v1.0 MSRGSGGGYDRHITIFSPEGRLFQVACSTLYRAAKLYNFKRPLPSRFAEYAFKAVKAATVTSIGVRGKDSVCVVTQKKVPDKLLDQTSVTHLFPITQYLG LLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEKGPQLYKCDPAGHFYGHKATSAGLKEQEAIN FLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKATEIEVGVVRADKPVFRVLSTEEIDEHLTAISERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	0	1
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	1.4	0.8870
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	3.2	0.7976
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	7.3	0.7529
AT3G12390			Nascent polypeptide-associated...		Lus10041610 [exp]	9.9	0.7690
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10024194 [exp]	12.8	0.7090
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	16.0	0.7426
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	16.5	0.7004
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	17.0	0.7040
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	18.3	0.7665
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	21.5	0.7517

Compare expression of checked genes

Lus10039932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.