Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15470 196 / 2e-58 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 182 / 2e-53 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 73 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G37670 70 / 4e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 69 / 1e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 67 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 67 / 6e-13 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 59 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 59 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027670 [exp] 390 / 7e-141 AT3G15470 196 / 2e-58 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 85 / 4e-19 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023033 [exp] 84 / 8e-19 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 84 / 9e-19 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 83 / 1e-18 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 77 / 1e-16 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 66 / 1e-12 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023797 [exp] 66 / 2e-12 AT5G02430 423 / 7e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 65 / 3e-12 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122500 [exp] 314 / 4e-102 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 314 / 6e-102 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G086600 [exp] 100 / 2e-24 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 87 / 4e-20 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 78 / 6e-17 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 73 / 3e-15 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 70 / 6e-14 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 69 / 6e-14 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 69 / 1e-13 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 67 / 4e-13 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039933 pacid=23173502 polypeptide=Lus10039933 locus=Lus10039933.g ID=Lus10039933.BGIv1.0 annot-version=v1.0 ATGTCATCCTCGGTCACAGCAAATGGGAAATTTGTTGTCTCAGCTAGTGAGGACTCATATGTCTACATATGGAAGCATGAGGCTGATTCACGGTTGACTA GAAGCAAAGGTGTTACTGTGACTCGATCATATGAGCATTTCCATTGCCAAGATGTATCTGCTGCGATTCCATGGCCTGGAATTGGTGAAACTTGGGGGCT TGCAGAAAGTCTATGTAGTTTGCAAAATGGTCGAGATGGCCATCTAGATGAAGTCTCCATTGCAAACCATCCACCTACACCTGCAGAGGAAGTTAGTGGG GGTGATCGTTCCCAATCATTGTCCGGATGCACAGGCAGTCCACTGAATGGAATCATCTCCAGCGCAACAAATGGCTACTTCTTCGACAGAATCTCAGCAA CATGGCCAGAGGAAAAACTGAATTTAGCCACTAGAAACCGTAGTCCTCAGACGAGTGTGGATGTGACCAATGGGCTGATGAACCAAAATATATCAGCTTA TGGGATGGTGATTGTCACAGCTGGCCTAAGAGGAGAGATCAGAGCTTACCAAAATTTTGGTTTGCCAGTTCGAATATGA
AA sequence Show only first row Show all	>Lus10039933 pacid=23173502 polypeptide=Lus10039933 locus=Lus10039933.g ID=Lus10039933.BGIv1.0 annot-version=v1.0 MSSSVTANGKFVVSASEDSYVYIWKHEADSRLTRSKGVTVTRSYEHFHCQDVSAAIPWPGIGETWGLAESLCSLQNGRDGHLDEVSIANHPPTPAEEVSG GDRSQSLSGCTGSPLNGIISSATNGYFFDRISATWPEEKLNLATRNRSPQTSVDVTNGLMNQNISAYGMVIVTAGLRGEIRAYQNFGLPVRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15470			Transducin/WD40 repeat-like su...		Lus10039933 [exp]	0	1
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	1.0	0.8849
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	3.7	0.8381
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	9.4	0.7859
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	9.5	0.7970
AT1G06230		GTE4	global transcription factor gr...		Lus10034067 [exp]	10.7	0.8176
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	12.3	0.8218
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	12.6	0.8006
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	12.7	0.8298
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	13.9	0.7852
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	14.3	0.8157

Compare expression of checked genes

Lus10039933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.