Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15470 627 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 599 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 388 / 7e-123 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 379 / 3e-119 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 257 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 256 / 2e-75 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 249 / 2e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 242 / 3e-70 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 212 / 6e-60 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 65 / 6e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027671 [exp] 1243 / 0 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 406 / 2e-128 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 401 / 3e-127 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 288 / 1e-86 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 285 / 7e-86 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 281 / 4e-84 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 259 / 2e-76 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 232 / 5e-67 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 223 / 1e-63 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403400 [exp] 751 / 0 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 737 / 0 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 411 / 3e-131 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 334 / 6e-104 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 300 / 5e-91 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 296 / 2e-89 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 284 / 4e-85 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 271 / 2e-80 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 242 / 2e-70 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 234 / 2e-67 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10039934 pacid=23173418 polypeptide=Lus10039934 locus=Lus10039934.g ID=Lus10039934.BGIv1.0 annot-version=v1.0 ATGAACAAACCCATCCACAAAGGCTTTGGCGAAGATGACGACAGCGAGGCCGACCAATTCTACGAATCCCTGGATCGCATTGCGGCCTCCACTTCTTGCT CTACTTCCAATTCCGACGACTCCGATCCCGACCCTCCTCAATTCTCCAACTACGACCTTTGGATCTCCGAACCTTCTTCTGTCTCCGAACGCCGCCGCAC TCTCCTCCGGCACATGGGTCTCTCCTACGACTCTTCTCTCTCCCGCCCCCTTGCTCCTCCAGATGTCAACTTCACTCCTCGATTCCTCGCTTCCAACATT TCTGGGGTTTCCCGATCCAAATCTGACAGCGGAATCGATCGCAGGGATGATGACTATCACACTGCGGCCTCTCCTCCTCGTACCACCACTTGTAATCATG ATTTCAATCCCTTTTCTTCTTCTTCTTCTTTTGTGTCTTCTTTTCCTTCTTCAATTCTTTCTGGCAATGTAAATAGCTATGTCACCAATCAGAATGACAA GACAGTTGTTGTAGCTGCCAACTCCGAGAAGAATGGTTCTGTTGTTGGCGGCTCAAAGCACACAAATCGTTCTTCTTCCCCCAAGTTTTCTGCTACTGCT TCTCCAAGTAAGCCTCCTTCTGGAAAACATGGGAGGAGCATGGATGTGACCAGGAGTTTCTCAAACACCAGCATTAGGGAGCTTGAGGAAGGTGTGTCGG ATTGTCCTGTGCATGACACTGAAGCGGTAGAGCTATCCCAGGCGTGTACAATTAAGAATCTAGATACTGGGAGAGAGTTTGTTGTTAATGAGATCAGGGA AGATGGGATGTGGAACAAGTTGAAAGAAGTGGGAACTGGTAGGCAGCTCACAATGGAGGAGTTTGAATTGACTGTGGGTCATTCACCTATCGTGCAAGAA CTGATGAGAAGACAGAGCGTCGAAGATGGTACTAGAGAAAATCACGACTCCAATTGTAACGGGGGTAATGGAACAGCAGGGTCGAAGCTGAAAAAGAAAG GTGGTTGGTTGAGAAGTATAAAAAACGTAGCAAGTAGTGTGAAAGGGCATAAGGAGAGAAGTAGTGATGAGAAGGACACTGGATCCGAGAGAGGAGGTAG GAGATCAAGTTCAGCTACTGATGATAGCCAAGATGTTTCTTTTCACGGGCCAGAGAGAGTGCGTGTAAAGCAATATGGCAAGTCATTTAAAGAGTTGACT GCAGTATATAAGAGTCAGGAGATTCAGGCTCATACTGGCTCTATTTGGGCTATTAAGTTTAGTCTGGATGGTAAATATTTGGCGAGTGCAGGCGAGGATT GTGTGATACATGTTTGGCAGGTTGTTGAAGCAGAAAGGAAAGGAGAGTTGTTGCTGGAAAAGCCGGAAGATGCAAACTTCAATATACTAGTAACACTAAA TGGGTCTCCTGAACCTATGTTCATGTCAACCTCGGCTGATGGTCATAATGAAAAGAGGAGAAGAGGGAGGTCATCATTAAGCAGAAAATCATTGAGCTTG GAACACATCATTGTACCTGAAACTGTATTTGCGCTTACAGATAAACCAATTTGCTCCTTTGAAGGACATACAGATGACGTCCTCGACTTATCGTGGTCCA AATCTCAGGATATTATAATGACAATTGCTCTGGAGTGTGCTGACAGGTTTCTGTTGTCTGATCTTCAGCACCTGCTTTCTTCATCAATGGACAAAACAGT GCGCCTTTGGCACTTATCTAGCAAGACATGTTTGAAGATCTTCTCACACAGTGATTATGTCACATGCATCCAGTTCAATCCTGTTGATGATACATACTTC ATCAGTGGGTCTCTGGATTCAAAGGTTCGTATATGGAGTATTCCTGATCGTCAAGTTGTTGATTGGAATGATGTACATGAGATGGTCACTGCTGCTTGCT ACACTCCAGATGGTCAGGGTGCACTAGTTGGTTCATATAAAGGAGGCTGCCGGCTTTACAACACATCTGAGAACAAGTTGCTGCAAAAATGTCAAATCAA TCTGCAGAATAAGAAGAAGAAATCTCATCTGAAGAAAATTACAGGGTTTCAGTTTGTACCTGGAAGCTCTTCCGAAGTGCTCATCACTTCTGCAGATTCT CGGATACGGGTCATTGATCGTACCGATTTGGTTCACAAGTTCAAAGGTAAATAG
AA sequence Show only first row Show all	>Lus10039934 pacid=23173418 polypeptide=Lus10039934 locus=Lus10039934.g ID=Lus10039934.BGIv1.0 annot-version=v1.0 MNKPIHKGFGEDDDSEADQFYESLDRIAASTSCSTSNSDDSDPDPPQFSNYDLWISEPSSVSERRRTLLRHMGLSYDSSLSRPLAPPDVNFTPRFLASNI SGVSRSKSDSGIDRRDDDYHTAASPPRTTTCNHDFNPFSSSSSFVSSFPSSILSGNVNSYVTNQNDKTVVVAANSEKNGSVVGGSKHTNRSSSPKFSATA SPSKPPSGKHGRSMDVTRSFSNTSIRELEEGVSDCPVHDTEAVELSQACTIKNLDTGREFVVNEIREDGMWNKLKEVGTGRQLTMEEFELTVGHSPIVQE LMRRQSVEDGTRENHDSNCNGGNGTAGSKLKKKGGWLRSIKNVASSVKGHKERSSDEKDTGSERGGRRSSSATDDSQDVSFHGPERVRVKQYGKSFKELT AVYKSQEIQAHTGSIWAIKFSLDGKYLASAGEDCVIHVWQVVEAERKGELLLEKPEDANFNILVTLNGSPEPMFMSTSADGHNEKRRRGRSSLSRKSLSL EHIIVPETVFALTDKPICSFEGHTDDVLDLSWSKSQDIIMTIALECADRFLLSDLQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDTYF ISGSLDSKVRIWSIPDRQVVDWNDVHEMVTAACYTPDGQGALVGSYKGGCRLYNTSENKLLQKCQINLQNKKKKSHLKKITGFQFVPGSSSEVLITSADS RIRVIDRTDLVHKFKGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	0	1
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	1.4	0.9486
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	1.7	0.9520
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	5.2	0.9381
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	6.3	0.9317
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	6.6	0.9371
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	6.7	0.9116
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	7.9	0.9254
AT5G07740			actin binding (.1)		Lus10015724 [exp]	8.0	0.9261
AT1G31780			unknown protein		Lus10037281 [exp]	9.2	0.9278
AT3G20720			unknown protein		Lus10043072 [exp]	10.1	0.8757

Compare expression of checked genes

Lus10039934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.