Plant FIBer expression Database

Lus10039935 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027672
[exp]
241 / 7e-78 AT5G62810 381 / 3e-127 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Lus10042119
[exp]
141 / 4e-40 AT5G62810 191 / 2e-55 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Lus10002378
[exp]
130 / 1e-37 AT5G62810 115 / 2e-29 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G076100
[exp]
85 / 2e-19 AT5G62810 316 / 4e-102 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Potri.012G080800
[exp]
84 / 5e-19 AT5G62810 330 / 3e-107 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info
Representative CDS sequence
>Lus10039935 pacid=23173449 polypeptide=Lus10039935 locus=Lus10039935.g ID=Lus10039935.BGIv1.0 annot-version=v1.0
ATGTTCGTTATTGGATATGCTGAGCAGCCGTGGGAGGGTAACGAAGCCAAACCCATGTCAAGAGGATTTGTTGCTTCAGTGAATGGAGAAGGTTTGGAGG
ACTTGGGCGCTCAGAAGAACAATGGAGTGAGCTATCAGCTGGATGGGGAGAGCACTGTGGTACCTTGGTGGCAGAAGAAGAACGCGAGAATAACTGAGGT
CGATAATGAGGAAGCGAAACCAGTTCCTGCCATCACACAGCCCCCTGAGCAACCAATTCTGCGGAGTTGGGTTCCTCCCCAACCACCACCTATTGCAATG
CCCGAAGCAGCAGAAGCTATTCGACAACCGAAACCCAGGAAAGAGACATTGGCAGACGATCAGTCTGTCTCTCAGCTGCAGCCAACTGAGGCAATAGATG
AGCTGCAGAGGGTCACAAAGATATCTGAGTTTGGAGGTGAAGTAGAGATGCACGGTGGAGGAGGACCAGAGACGAATGGAGAGTCGTCAACGGGGTTAAA
GTTGAGTGAGATTGAAGAAGAATCCCAACAGATGTATTGA
AA sequence
>Lus10039935 pacid=23173449 polypeptide=Lus10039935 locus=Lus10039935.g ID=Lus10039935.BGIv1.0 annot-version=v1.0
MFVIGYAEQPWEGNEAKPMSRGFVASVNGEGLEDLGAQKNNGVSYQLDGESTVVPWWQKKNARITEVDNEEAKPVPAITQPPEQPILRSWVPPQPPPIAM
PEAAEAIRQPKPRKETLADDQSVSQLQPTEAIDELQRVTKISEFGGEVEMHGGGGPETNGESSTGLKLSEIEEESQQMY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Lus10039935
[exp]
0 1
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10011716
[exp]
1.0 0.9377
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10011717
[exp]
2.0 0.9082
AT5G55500 ATXYLT "beta-1,2-xylosyltransferase",... Lus10014902
[exp]
3.9 0.8904
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Lus10007479
[exp]
4.9 0.8885
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10006596
[exp]
4.9 0.8719
AT3G51250 Senescence/dehydration-associa... Lus10028439
[exp]
5.3 0.8267
AT2G39260 binding;RNA binding (.1) Lus10030801
[exp]
5.5 0.8773
AT2G47790 Transducin/WD40 repeat-like su... Lus10003441
[exp]
5.7 0.8573
AT2G27030 CAM5, CAM2, ACA... calmodulin 5 (.1.2.3) Lus10010386
[exp]
6.5 0.8706
AT5G55470 ATNHX3 Na+/H+ \(sodium hydrogen\) exc... Lus10016583
[exp]
7.5 0.8152

Lus10039935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.