Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62810 204 / 2e-62 ATPEX14, PED2, PEX14 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027672 [exp] 410 / 2e-142 AT5G62810 381 / 3e-127 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002377 [exp] 233 / 6e-76 AT5G62810 199 / 5e-60 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10042119 [exp] 211 / 9e-66 AT5G62810 191 / 2e-55 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G076100 [exp] 236 / 2e-74 AT5G62810 316 / 4e-102 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Potri.012G080800 [exp] 231 / 8e-73 AT5G62810 330 / 3e-107 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04695 [flax] [poplar] Pex14_N Pex14 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039936 pacid=23173392 polypeptide=Lus10039936 locus=Lus10039936.g ID=Lus10039936.BGIv1.0 annot-version=v1.0 ATGGCAAATGAATCCTCGTATCCTCCTGATCCTCTTGCCTCCGCTGCAAATCCTCATAGTTCAGTGAAAGCTGTGTTACCAGCTACTGAGATTAATGAAG ATGCCAAACGACTGAATCCCCAGTCCGTCTTTGTGAATTCAGAACCAATACGAGAAGACCAACTACGGAATGCTGTGAACTTACTTTCTCACCCGAAAGT TAGGAGTTCTGCAGTCATCTACAGAAGATCTTTTCTCGAGAAGAAGGTACTTACGAAAGAAGAAATTGATGAAGCTTTCAGACGTGTGCCAGATCCTCTG CCTAGTGCTCAGACAATTGGCACCAATCAAGAGGGGCAGGAATCAACATCAAGCAGTCAGCCAAGAGTTTTTGCACAAACCCCACAACCAGTGCCAACTG GACTTAGTGGTGGGAGGTCCTCACTAGTGACCTTGGCTCATTACCGGATTCATTGGTACCATGCTGTTTGCGCAGTTGGATTGGTAGCGGCCTCTGGTGT TGGAACTGTTATATGGATTAAGAAGTCCATGATTCCTCGGTTAAAATATTGGATACGTAAAGTTGTTTGGGAAGAGAAAGATGGTAACGGAAAATTAAGT TTGGTTGAAGAAGCTGCAGCAGCTGTGAAAGCAGCTGCGGCGTATGCTACTGATGTCGCAAAGACAAGCCAAGGTTTGATAATTTCAAGAAGTGAAGAGA AAGCATACATTGAGAAGAACTTCATGAATTTGTTAGATTTGCAAGTAAAGGAAATGAGGTCAATGAGCAATGCCATACAATGA
AA sequence Show only first row Show all	>Lus10039936 pacid=23173392 polypeptide=Lus10039936 locus=Lus10039936.g ID=Lus10039936.BGIv1.0 annot-version=v1.0 MANESSYPPDPLASAANPHSSVKAVLPATEINEDAKRLNPQSVFVNSEPIREDQLRNAVNLLSHPKVRSSAVIYRRSFLEKKVLTKEEIDEAFRRVPDPL PSAQTIGTNQEGQESTSSSQPRVFAQTPQPVPTGLSGGRSSLVTLAHYRIHWYHAVCAVGLVAASGVGTVIWIKKSMIPRLKYWIRKVVWEEKDGNGKLS LVEEAAAAVKAAAAYATDVAKTSQGLIISRSEEKAYIEKNFMNLLDLQVKEMRSMSNAIQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039936 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	4.6	1.0000
					Lus10003843 [exp]	7.9	1.0000
					Lus10001326 [exp]	9.4	1.0000
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10038850 [exp]	11.7	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	11.7	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	12.1	1.0000
					Lus10027374 [exp]	12.5	1.0000
					Lus10033373 [exp]	13.0	1.0000
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	14.4	1.0000
					Lus10026755 [exp]	14.8	1.0000

Compare expression of checked genes

Lus10039936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.