Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65420 200 / 3e-66 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) AT3G56830 102 / 5e-28 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) AT5G43050 40 / 0.0002 NPQ6 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027674 [exp] 297 / 4e-104 AT1G65420 195 / 2e-63 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Lus10030290 [exp] 87 / 2e-22 AT3G56830 151 / 8e-47 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) Lus10038888 [exp] 40 / 0.0001 AT5G43050 197 / 1e-65 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076900 [exp] 213 / 8e-71 AT1G65420 229 / 2e-76 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Potri.002G146000 [exp] 107 / 2e-29 AT3G56830 171 / 3e-53 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) Potri.012G134700 [exp] 41 / 7e-05 AT5G43050 212 / 1e-71 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04483 [flax] [poplar] DUF565 Protein of unknown function (DUF565)
Representative CDS sequence Show only first row Show all	>Lus10039937 pacid=23173426 polypeptide=Lus10039937 locus=Lus10039937.g ID=Lus10039937.BGIv1.0 annot-version=v1.0 ATGAGACTAGCTAGACACAGGAGATGCTGGAGCATAGCGATGGCCTTAAATGCAGGTGGTGGATTACCTGGGAACGAACAGCAGAATCTGAATGATGGTG ATGGTTCGGGATTTAGCAGTACTCGATTGGGCAGGATAGTGAGTGCAGGTGGGAGGCAGCTGCTGGAGAAGCTAAATTCAGCGAGGAAGAACTTCCCCAT GAAAGTTTTTCTGCTGCTCCTAGGGTTCTATACCGCAAATGCCTTGGCTACAATACTCGGACAGACCGGTGATTGGGACGTGTTGGTTGCTGGTATTGTG GTTGCCGCAATTGAAGGGATTGGGATGCTTATGTACAGAAACAGAAAGACTAGTTCAGGAGGTTCCCCTTCCTTGTCTGAAGGGAGGTTCAAGTCTTTCG TGTTGATGGTTAACTATTGGAAAGCCGGTGTTTGTTTAGGACTCTTTGTAGATGCTTTTAAGCTGGGCAGTTAA
AA sequence Show only first row Show all	>Lus10039937 pacid=23173426 polypeptide=Lus10039937 locus=Lus10039937.g ID=Lus10039937.BGIv1.0 annot-version=v1.0 MRLARHRRCWSIAMALNAGGGLPGNEQQNLNDGDGSGFSSTRLGRIVSAGGRQLLEKLNSARKNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGIV VAAIEGIGMLMYRNRKTSSGGSPSLSEGRFKSFVLMVNYWKAGVCLGLFVDAFKLGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	0	1
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	1.7	0.8767
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	2.0	0.9018
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	3.9	0.8673
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	4.9	0.8743
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	5.7	0.8394
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	5.7	0.8768
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	6.9	0.8264
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	6.9	0.8666
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	7.3	0.8248
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	8.7	0.8412

Compare expression of checked genes

Lus10039937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.