Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63090 213 / 6e-71 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 184 / 5e-60 AS2 LBD25 LOB domain-containing protein 25 (.1) AT2G30130 154 / 2e-47 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G65620 153 / 3e-47 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT5G66870 152 / 1e-45 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G23660 152 / 2e-45 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT1G07900 140 / 5e-42 AS2 LBD1 LOB domain-containing protein 1 (.1) AT1G31320 139 / 6e-42 AS2 LBD4 LOB domain-containing protein 4 (.1) AT1G16530 138 / 9e-42 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT2G28500 137 / 2e-40 AS2 LBD11 LOB domain-containing protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027676 [exp] 285 / 4e-99 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10022264 [exp] 193 / 7e-63 AT5G63090 223 / 9e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10031191 [exp] 153 / 6e-48 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10016769 [exp] 157 / 1e-47 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022463 [exp] 157 / 2e-47 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10031769 [exp] 150 / 8e-47 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10005313 [exp] 152 / 3e-46 AT5G66870 209 / 4e-67 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10040638 [exp] 150 / 3e-46 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 149 / 5e-46 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082200 [exp] 227 / 1e-76 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.012G083500 [exp] 227 / 2e-76 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.001G345700 [exp] 206 / 2e-68 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.T125408 [exp] 188 / 2e-61 AT5G63090 172 / 3e-55 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.005G134900 [exp] 159 / 3e-48 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.005G097800 [exp] 152 / 1e-47 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 152 / 2e-47 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 151 / 6e-47 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.007G039500 [exp] 155 / 7e-47 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.008G079800 [exp] 153 / 8e-47 AT1G65620 263 / 7e-90 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10039940 pacid=23173440 polypeptide=Lus10039940 locus=Lus10039940.g ID=Lus10039940.BGIv1.0 annot-version=v1.0 ATGGCAGCATCATCATCATCATCAACATCAACAAACTCGTACAACTCACCGTGCGCAGCGTGCAAGTTCCTGAGAAGGAAATGCATGCCAGGGTGCATAT TTGCGCCCTACTTCCCACCGGAGGAGCCCAACAAATTCGCGAACGTACACAAGATATTCGGGGCCAGCAACGTGACCAAGCTCCTCAACGAGCTGCTCCC TCATCAGAGGGAGGATGCGGTCAACTCCTTAGCCTACGAGGCCGAGGCTCGGGTGAGGGACCCCGTCTACGGGTGCGTTGGTGCCATCTCGTTCCTTCAG CGCCAGGTCCACCGCCTACAGAAAGAGCTCGACGCCGCCAATGCTGACCTTATTCGCTTCGCATGTAACGGCGCTGCCACAACAACAACATTGCCACCAG TAGTTGCGAGCCGGGCACTGGTATTTGATGATCCCTTGATCACCACTAGGAGGCCCTATGTTGGGCCGAATGTTTCGGGATTGCCCTCGTTTCCTTATGG ACATGATCTCCCTTGGAATGATGATCATGCCAACAATGGAGGAGGAGTTGGAGGAGGAGGAGGAGGTATGTGA
AA sequence Show only first row Show all	>Lus10039940 pacid=23173440 polypeptide=Lus10039940 locus=Lus10039940.g ID=Lus10039940.BGIv1.0 annot-version=v1.0 MAASSSSSTSTNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPNKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQ RQVHRLQKELDAANADLIRFACNGAATTTTLPPVVASRALVFDDPLITTRRPYVGPNVSGLPSFPYGHDLPWNDDHANNGGGVGGGGGGM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10039940 [exp]	0	1
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10029287 [exp]	4.0	0.6595
					Lus10000293 [exp]	10.2	0.6471
AT2G27410	B3		Domain of unknown function (DU...		Lus10035393 [exp]	14.1	0.6575
					Lus10033709 [exp]	25.9	0.6372
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	33.5	0.6375
AT1G62850			Class I peptide chain release ...		Lus10024564 [exp]	36.0	0.6477
AT1G06645			2-oxoglutarate (2OG) and Fe(II...		Lus10033876 [exp]	53.0	0.6351
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	68.9	0.6152
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	78.7	0.6230
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	89.6	0.5736

Compare expression of checked genes

Lus10039940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.