Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017044 [exp] 385 / 1e-135 ND / Lus10003428 [exp] 383 / 1e-134 ND / Lus10005604 [exp] 379 / 8e-134 ND / Lus10032803 [exp] 378 / 3e-133 ND / Lus10029529 [exp] 362 / 1e-124 ND / Lus10008258 [exp] 334 / 5e-116 ND / Lus10000774 [exp] 318 / 4e-110 ND / Lus10000303 [exp] 301 / 2e-103 ND / Lus10042578 [exp] 285 / 1e-97 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039943 pacid=23173508 polypeptide=Lus10039943 locus=Lus10039943.g ID=Lus10039943.BGIv1.0 annot-version=v1.0 ATGACTCGTGTGCAAAGTTTACACTCTAAGGAGGCCGCTGACGAGGAGCTGAAACCATACCACTTACATAAATTTTGGCGTTCATTGTCTTACACGATCC CGACAGAGCACGACGTTTGGGCTGAGCACGATGCTGCTGATCGCCATATTCTTGACGGGATGGTTAAGACTATTTGCTCCATAGGAGGGCCATCCGTTCG AGCGTTGAGTCGCTTAGTTCGGTCAGCATTTCAACCCGAGTCCGAAGGACTCAAGGAACCGAAGGTTGCCGACGCTCCTAAAGGCCGACCGCGTACAAGA AAGATCGACCGTCGAAATCCTTCTTGGCATGAGCATGCTAGTGCACAGTGTACTCCTCTGAAGAGTAGAGGTAGCTCGACTAGATCTACACCTTCCTCGA AGGCTACTTCTTCAAAGACTGTTCGTCAGTTTCGGAGGTACATCCCGGCGGGTATGCACCCGGTACTTGGTGATGTGTTTAACTCACGTGGGGATGGACA TTGCGGATTTCGGTGCATTTCATACATAGTATCGAGCGGTGACGATAACCAGTATGTGGACATGCGGGAGGCGTATAATGGAACATGTGACGTTGAACTA GTACGAACTTTACATAATGTCTATTCCACTGACTTGAACGGCGTCATTCACCGGTTGGGTTGGCTATGGGAAACTCCATGTGATGAAGCATGGTGGTTTT GGAATGTGGATCTTTTGGGGTATGCCACCATGTTTAACTGGACTTTCGTTGTCTTCGGACCCGGACTTCGAGGGGTACCTTATGGGGAGACTTACCTACC GTTGGTAGTACAAGAAGGCACAACGGCACCAAGAGGTGTGTCGTATATAGTTTGCACCGGGAATCACTAG
AA sequence Show only first row Show all	>Lus10039943 pacid=23173508 polypeptide=Lus10039943 locus=Lus10039943.g ID=Lus10039943.BGIv1.0 annot-version=v1.0 MTRVQSLHSKEAADEELKPYHLHKFWRSLSYTIPTEHDVWAEHDAADRHILDGMVKTICSIGGPSVRALSRLVRSAFQPESEGLKEPKVADAPKGRPRTR KIDRRNPSWHEHASAQCTPLKSRGSSTRSTPSSKATSSKTVRQFRRYIPAGMHPVLGDVFNSRGDGHCGFRCISYIVSSGDDNQYVDMREAYNGTCDVEL VRTLHNVYSTDLNGVIHRLGWLWETPCDEAWWFWNVDLLGYATMFNWTFVVFGPGLRGVPYGETYLPLVVQEGTTAPRGVSYIVCTGNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039943 [exp]	0	1
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	1.4	0.8737
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	2.4	0.8385
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	4.2	0.8345
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10018574 [exp]	6.2	0.7674
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	6.7	0.7804
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	7.3	0.8383
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	8.5	0.8354
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	8.7	0.7245
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	9.5	0.8354
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	10.1	0.7679

Compare expression of checked genes

Lus10039943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.