Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24670 471 / 3e-165 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G70560 392 / 1e-134 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G23320 386 / 2e-132 TAR1 tryptophan aminotransferase related 1 (.1) AT1G34060 258 / 2e-81 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 258 / 2e-81 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027678 [exp] 672 / 0 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 488 / 8e-167 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10036846 [exp] 369 / 2e-125 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10006199 [exp] 368 / 2e-125 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10042084 [exp] 245 / 4e-79 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2) Lus10028695 [exp] 243 / 3e-75 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 225 / 2e-68 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042085 [exp] 0 / 1 ND 43 / 2e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083300 [exp] 517 / 0 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 516 / 0 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.010G044500 [exp] 406 / 4e-140 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 400 / 1e-137 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.002G064000 [exp] 257 / 3e-81 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G063800 [exp] 255 / 2e-80 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Lus10039944 pacid=23173446 polypeptide=Lus10039944 locus=Lus10039944.g ID=Lus10039944.BGIv1.0 annot-version=v1.0 ATGGGAGGTGGTGGGTCTTTGAATGGTATATCGGCGAGACACCTTCTTGTGGCCTCCCTCGCACTCAACGTTAGCCTCCTCGTTCGATTCTACATTAATG GAAATGGTTTGGGCCCAGCTCTGGATTTGCTGTTTTCCCGTAGCCAAAGTAATAATCTTGGCCGCACATCTCAAGACGCTGCTGCGTTAGTTGTGGACGA CGGTAGAATCATCAACCTTGACCATGGCGACCCGACAATGTACGAGCAGTTTTGGCGGGAAACCGGTGACAGAGCTACCATCGTCATTCCAGGTTGGCAG TCTACCAGCTACTTCTCCGACATTGGAAATCTCTGTTGGTTCCTTGAATCCGAGTTATCTCGTCAGATCGTCAGGCTCCACTCAGTCGTCGGAAATGCTA TCACAGACGGCCGCCACATCGTCGTCGGCACCGGCTCAACCCAGCTCTTTTTAGCCATCTTGTACGCTCTTTGCCCTCAAAACGTCACCCAACCCGTTAG CGTCGTTTCCATGGCACCCTTCTACTCCTCGTACCCTACGACGACGGATTGCCTGAGATCGGGTCTGTACAGATGGGCGGGCGACGCTGCCTCTTTCGAT GGTGACGGGTCGTTCGTAGAATTGGTTACATCCCCGAATAATCCGGATGGGTTTTTGAGGGATCCGGTGGTAAAGAAAAATGGAGGAATCTTGGTTCACG ATCTGGCTTACTATTGGCCGCAGTATACTGCCGTGACGGCGCCGGTGGATCACGACATTTCGCTCTTCACCGTCTCCAAATCATCCGGCCACGCTGGAAT TAGAATCGGTTGGGCATTGGTGAAGGACGCAGAAGTGGCGAGGAAGATGACAAAATTCATAGAGCTGAACAGTATAGGGGTGTCCAAGGACTCGCAGCTT AGAGCGGCGAAGATAATGAAGGTGGTTTCGGATGGAGAATCGGAAGGGAGGAGTGAGAGTGATTCTCTGTTCAAGTTCGGATTCGTAAAGATGGAAGAGA GGTGGAGGATGCTGAGGGAGGCTGTGAAACAGAGTGGAGGCTTTGTTAGCTTGCCAGATTACCCTTCCCTTTACTGCAACTTCAATGCCCGATCTTTTGG AAACCAACCCGCATTTGCGTGGGTGAAGTGCGAGGGTGAGATTGAGGACTGCGAAGCGATGTTCAGAGAGAAGAAGATATTAACGAGGGGTGGAGTTCAT TTCGGGGCTAGCCCTAAGCACGTTAGAATTAGTATGCTGGACCGTGATGTTAATTTTAACGTCTTCATCAAAAGACTGAGCAACTTATAA
AA sequence Show only first row Show all	>Lus10039944 pacid=23173446 polypeptide=Lus10039944 locus=Lus10039944.g ID=Lus10039944.BGIv1.0 annot-version=v1.0 MGGGGSLNGISARHLLVASLALNVSLLVRFYINGNGLGPALDLLFSRSQSNNLGRTSQDAAALVVDDGRIINLDHGDPTMYEQFWRETGDRATIVIPGWQ STSYFSDIGNLCWFLESELSRQIVRLHSVVGNAITDGRHIVVGTGSTQLFLAILYALCPQNVTQPVSVVSMAPFYSSYPTTTDCLRSGLYRWAGDAASFD GDGSFVELVTSPNNPDGFLRDPVVKKNGGILVHDLAYYWPQYTAVTAPVDHDISLFTVSKSSGHAGIRIGWALVKDAEVARKMTKFIELNSIGVSKDSQL RAAKIMKVVSDGESEGRSESDSLFKFGFVKMEERWRMLREAVKQSGGFVSLPDYPSLYCNFNARSFGNQPAFAWVKCEGEIEDCEAMFREKKILTRGGVH FGASPKHVRISMLDRDVNFNVFIKRLSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10039944 [exp]	0	1
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	14.7	0.8881
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	14.8	0.8988
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	21.4	0.8794
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	24.5	0.8905
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	32.0	0.8735
AT2G16485			nucleic acid binding;zinc ion ...		Lus10042072 [exp]	32.6	0.8724
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	36.9	0.8830
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	38.5	0.8826
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	39.6	0.8827
AT4G21520			Transducin/WD40 repeat-like su...		Lus10011253 [exp]	43.9	0.8781

Compare expression of checked genes

Lus10039944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.