Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40390 123 / 4e-33 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 101 / 2e-25 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1) AT5G20250 90 / 3e-21 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT3G57520 80 / 7e-18 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 77 / 6e-17 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027679 [exp] 187 / 1e-55 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022241 [exp] 129 / 4e-37 AT5G40390 342 / 2e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10017516 [exp] 94 / 2e-22 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10007537 [exp] 76 / 2e-16 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124908 [exp] 140 / 9e-39 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.017G036700 [exp] 133 / 2e-36 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.004G207900 [exp] 132 / 6e-36 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.007G123400 [exp] 131 / 6e-36 AT5G40390 1147 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.002G193700 [exp] 103 / 5e-26 AT4G01970 1040 / 0.0 raffinose synthase 4, stachyose synthase (.1) Potri.014G118400 [exp] 103 / 6e-26 AT4G01970 1087 / 0.0 raffinose synthase 4, stachyose synthase (.1) Potri.018G126400 [exp] 89 / 8e-21 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.006G065700 [exp] 88 / 1e-20 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.015G086400 [exp] 82 / 1e-18 AT3G57520 827 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.011G166700 [exp] 82 / 2e-18 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05691 [flax] [poplar] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Lus10039946 pacid=23173501 polypeptide=Lus10039946 locus=Lus10039946.g ID=Lus10039946.BGIv1.0 annot-version=v1.0 ATGAACCTCACGGCTTCTCGGTGCACTATGATGGAGAAGCTGCTCCTCAAGAAGTTTTCAGGCTATGCCCAGCTCCCGCACTCTACGGTGTGGATCCCTA CGGTTCCTCAAGTAGTCACAAACTGGGCCTCCCTCCAACCCTCCGCCGATCACAACGACTACGTGGACATGTGCGTGGAAAGTGGGTCGACCAGGGTCAC CGGATCGATCTTCGGGAGCTGCCTGTATATGCAGGCAGGGGATGACCCGTATACTCTGTTGAAGGACTCAGTGAAGGCTATTAAGGTACATTTAGCGACG TTCAATCTGTTGGAAGAAAAATCCCCGCCTGATATTGTGGACAAATTAGGATGGTGCACTTGGGACGCATTTTACCTCAACGTAAACCCTAAGGGAGTGA AGGGAAGGAGTGAAGGGACTGGTGGAAGGCGGGTGCCCAGCGGGTATGGTGCTGATCGACGACGGGTGGCAGTCAATTTTTCACGACGACGATCCAATTA TAGACCGTGA
AA sequence Show only first row Show all	>Lus10039946 pacid=23173501 polypeptide=Lus10039946 locus=Lus10039946.g ID=Lus10039946.BGIv1.0 annot-version=v1.0 MNLTASRCTMMEKLLLKKFSGYAQLPHSTVWIPTVPQVVTNWASLQPSADHNDYVDMCVESGSTRVTGSIFGSCLYMQAGDDPYTLLKDSVKAIKVHLAT FNLLEEKSPPDIVDKLGWCTWDAFYLNVNPKGVKGRSEGTGGRRVPSGYGADRRRVAVNFSRRRSNYRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	0	1
					Lus10011286 [exp]	1.7	0.7399
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019320 [exp]	4.2	0.7061
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10039747 [exp]	15.9	0.7392
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	18.4	0.7385
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10017671 [exp]	21.0	0.6978
					Lus10007507 [exp]	27.3	0.7299
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	30.9	0.7187
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	33.9	0.6426
AT3G01490			Protein kinase superfamily pro...		Lus10030621 [exp]	37.8	0.5964
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	39.2	0.6782

Compare expression of checked genes

Lus10039946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.