Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34140 349 / 1e-115 D111/G-patch domain-containing protein (.1.2.3) AT3G54230 54 / 3e-07 SUA suppressor of abi3-5 (.1.2) AT3G52120 51 / 1e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT3G52350 44 / 5e-05 D111/G-patch domain-containing protein (.1) AT1G63980 42 / 0.0006 D111/G-patch domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037485 [exp] 50 / 3e-06 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10015703 [exp] 50 / 4e-06 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10010955 [exp] 50 / 6e-06 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 44 / 0.0004 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10027680 [exp] 0 / 1 ND 46 / 6e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197500 [exp] 444 / 4e-153 AT4G34140 353 / 4e-117 D111/G-patch domain-containing protein (.1.2.3) Potri.012G087601 [exp] 64 / 3e-12 ND / Potri.004G081800 [exp] 54 / 1e-07 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.009G064600 [exp] 48 / 1e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.001G269900 [exp] 47 / 2e-05 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.017G138401 [exp] 45 / 6e-05 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.017G138500 [exp] 45 / 0.0001 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.T124808 [exp] 42 / 0.0001 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10039947 pacid=23173404 polypeptide=Lus10039947 locus=Lus10039947.g ID=Lus10039947.BGIv1.0 annot-version=v1.0 ATGGAGGAAACGAAGGGCGTTGCAAGTGATTCTTCTTCTTTCATCTGGGACGAAAATACTCATTTATATTTCCATGCTGGAAGTGGATTTTATCACGACC CAGTTGCTGGATGGTACTACAGCAGCAGAGATGGACTCTATTACACCTTTGAGAATGGGTGCTATGGGCTCTTACAATCCGATGAGGCTAATCAACCTGA AGCAGTATCTGGAGGAGCTCCTGTTGGTAATACTTCTGACCTAAAGTTAGAGCACTTGAATGTTGATGGAGACAATGTCGAGGGAAGTTTGTGTTCTAGA GATGAGTCTGATGGTTTCCAACATGGGATAGGCGAACCTCTCACAACTACAGGAGATACCGAGTGTGGCAGCTTTCAAGAACCCGAGTATCCACCTCCAC CATCGAACTGGTTGGAAGAGACACTCATCAACCTGTATTTATCTGGTTATAACCGAGCAGTTGATGCGCCTGAGAATTCCATGCTGTCCTTGGATATGGA TGCTGGTGATAGTGTCTACTCTTCAGTAGTCAGGGAGGACATTAACATGACTGAAGAACAAGAAAGGATAACAAAGGTTTCTAGTGGTTTGAGCGATCCT TGTGAGAGTATGATACGTGAAGATTTTTCGAGAGAAGAAGAGAACTGGCTGGCTCAATATGGCCAAGTAGTTCATGAGGAGAGAGAGACGTTGCAACTAT GTGCTGCTGTAGATTTATGGGATTGGACAATGGTCACAGATTCAAAAGAGGATGGAAAAAGTGGCTTGGCTAGGCTAGTTGGCAGGTTGGTGAAACCGTC TGCAAAACTTCACCCTTCTGTGCACAATAGTGGTAGCCGCTTTAGGACTGCTCCAATATGTGAAGTCCATCTCGATCTTGTACGGGTTAAAACAGGACAA ATCTACAAGTTGCATAATCCTAGTTTGCAGTATTTGGCTTCCTTGTCAACTTATGATTCTTCCAACCCAACAAAAGATTGGTGTTTCCCTCAGCTGTCAA TTAGTGCAGAAGATGGATTGCTACAATCGAAATGGTCAAATGAATTGAGATCTGACAGTGGAGCTGCTGCAGCCAAGTCATCCAGTTATCAACCCTCGAA ATCAATAAAGGTAGTTCCTGTTACGCAAAGAAGTCATCTATATAAGGATAGAGCGGCTGAGAGAAGAAAATTGCATGGTGGTTATGGCGTGGGTCCTGGT CAGAAGATTTCATCAGTAAGCAATCCTGGGATTTCAGAAGAAATAACTGCAGACGATGTCGAAGTTGAAGCTGAAGCACCAAGCACACCTTTTGGAGCCG ATAGTTGTGCCAGAAAGATACTCGAGGGGATGGGTTGGCAAGAGGGTGAAGGTCTTGGCAGCAGCAGGAAAGGATTGGTTGAACCAATACAGGCAGTGGG GAACACTGGGAATGCTGGATTAGGGTGGCCAAAGAACAACAAGAGGAGGTACAATTGA
AA sequence Show only first row Show all	>Lus10039947 pacid=23173404 polypeptide=Lus10039947 locus=Lus10039947.g ID=Lus10039947.BGIv1.0 annot-version=v1.0 MEETKGVASDSSSFIWDENTHLYFHAGSGFYHDPVAGWYYSSRDGLYYTFENGCYGLLQSDEANQPEAVSGGAPVGNTSDLKLEHLNVDGDNVEGSLCSR DESDGFQHGIGEPLTTTGDTECGSFQEPEYPPPPSNWLEETLINLYLSGYNRAVDAPENSMLSLDMDAGDSVYSSVVREDINMTEEQERITKVSSGLSDP CESMIREDFSREEENWLAQYGQVVHEERETLQLCAAVDLWDWTMVTDSKEDGKSGLARLVGRLVKPSAKLHPSVHNSGSRFRTAPICEVHLDLVRVKTGQ IYKLHNPSLQYLASLSTYDSSNPTKDWCFPQLSISAEDGLLQSKWSNELRSDSGAAAAKSSSYQPSKSIKVVPVTQRSHLYKDRAAERRKLHGGYGVGPG QKISSVSNPGISEEITADDVEVEAEAPSTPFGADSCARKILEGMGWQEGEGLGSSRKGLVEPIQAVGNTGNAGLGWPKNNKRRYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	0	1
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026717 [exp]	6.6	0.9002
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	7.2	0.8926
AT2G34750			RNA polymerase I specific tran...		Lus10005701 [exp]	7.4	0.8457
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	8.2	0.9002
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	12.6	0.8976
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	16.2	0.8840
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	16.7	0.8705
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	17.9	0.8910
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030867 [exp]	21.2	0.8435
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	23.5	0.8893

Compare expression of checked genes

Lus10039947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.