Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54170 330 / 3e-112 ATFIP37 FKBP12 interacting protein 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027681 [exp] 478 / 6e-170 AT3G54170 402 / 2e-140 FKBP12 interacting protein 37 (.1) Lus10018090 [exp] 379 / 5e-131 AT3G54170 390 / 6e-136 FKBP12 interacting protein 37 (.1) Lus10042086 [exp] 364 / 1e-118 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197600 [exp] 390 / 9e-136 AT3G54170 359 / 5e-124 FKBP12 interacting protein 37 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039948 pacid=23173456 polypeptide=Lus10039948 locus=Lus10039948.g ID=Lus10039948.BGIv1.0 annot-version=v1.0 ATGGCTTCTCGCAACAATCTCGACGAGGACGATGACTTCGGTGGTGATTTCAGTGGCAGCCACAACGGCCGGCGTTCAGGTAACAAGAGGAGTTTTGGGG ACCTTGAAGACGATGACGATGACATTTTTAGCTCCAAGAAGCATTTTAATGGCAACCAAGGACATTTTTATAGGACTTCATTGGCAATGTTCTTACTGCA GGGTATTTCCAAGGTAGAAGAAACTGCAATGATTCTGTCTCTTCGTGAGAGTCTTGACAACTGCAAGAACGACCTTGTGACATGCCAAACAGATCTTGAA GTCGCAAAGTTGGAGATTCAAAACTGGCTTTCTGCATTTGAGAATTCCTCTTTCATACCCTTTGGGAAATCTCCAGAACCTAAAATAGTCATCAATTACC TTCAGACTTTGAAATCCTCTGAGGAGTCTATAAAGGAACAGCTTGAGAAAGCAAAGAAAAAAGAAGCAGCCTTCATTGTAACATTTGCTAAGAGGGAGCA GGAGATAGCTGAATTGAAGTCTGCAGTTCGGGACTTGAGAGCACAACTAAAGCCACCATCAATGCAGGCAAGGAGACTGCTACTTGATCCTGCAATTCAC GAGGAATTTACTCGCTTGAAGAATTTGGTCGAAGAGAAGGACAAGAAGGTGAAGGAATTACAGGATAACATGGCTGCCGTGAATTTTACTCCACAAAGCA AGATGGGGAAGATGCTGATGGCAAAGTGCAAGACTCTGATAGAGGAAAATGTAGAGATTGGTACTCAAGCTGCTGAAGGAAAGATACACGAGCTGAGGTT GAAACTGGCTTTGCAGAAATCTCAAAATTCAGAGCTCCGAAACCAGTATGAAGGCTTGTACAAGCAAATGGAGGGACTAACAAACGATGTAGAGAAGTCA AATGAGATGGTACTTATCTTACAAGGGAAAGTTGGAGATAAAGATCGAGAGATCAACCAGCTGAAGCAGAAACTTGAGCTTCAACGACAGAAAGCGGCTG AGGCAGAAGAAGCAGCAGAGCTACCCAATAATATGACTCCTCCTCCTCCAGAAAATGCACTGATAACACCAAAGCAAGAAATTGAAGCTCCGTAG
AA sequence Show only first row Show all	>Lus10039948 pacid=23173456 polypeptide=Lus10039948 locus=Lus10039948.g ID=Lus10039948.BGIv1.0 annot-version=v1.0 MASRNNLDEDDDFGGDFSGSHNGRRSGNKRSFGDLEDDDDDIFSSKKHFNGNQGHFYRTSLAMFLLQGISKVEETAMILSLRESLDNCKNDLVTCQTDLE VAKLEIQNWLSAFENSSFIPFGKSPEPKIVINYLQTLKSSEESIKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLRAQLKPPSMQARRLLLDPAIH EEFTRLKNLVEEKDKKVKELQDNMAAVNFTPQSKMGKMLMAKCKTLIEENVEIGTQAAEGKIHELRLKLALQKSQNSELRNQYEGLYKQMEGLTNDVEKS NEMVLILQGKVGDKDREINQLKQKLELQRQKAAEAEEAAELPNNMTPPPPENALITPKQEIEAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	1.0	0.9212
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	3.2	0.8940
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	4.5	0.8768
AT1G73350			unknown protein		Lus10042294 [exp]	4.6	0.8921
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	5.1	0.8450
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	5.9	0.8745
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	6.9	0.8470
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	7.3	0.8548
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	7.3	0.8607
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	7.9	0.8580

Compare expression of checked genes

Lus10039948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.