Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10790 116 / 2e-29 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027684 [exp] 315 / 4e-107 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10003214 [exp] 137 / 3e-37 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10017317 [exp] 129 / 1e-34 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10041365 [exp] 45 / 4e-05 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080200 [exp] 191 / 5e-58 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G145200 [exp] 104 / 4e-25 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 96 / 6e-22 AT4G10790 520 / 0.0 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10039951 pacid=23173543 polypeptide=Lus10039951 locus=Lus10039951.g ID=Lus10039951.BGIv1.0 annot-version=v1.0 ATGGGAAATGGAATGGACCGTAGTACATCTGGAGGGAATGGAGGAAGGAGAAGAGACATGATTCCTCCACCTGATGAGGAATTTGAATTCCTGCCCACTT TCCAGAGGCAGTACGGAACCAACCATCCATTCTTCTACAGCTTCAGATTGGAAGAGGCACTGAGTATAGCAGACGAGGAGCGCAAATTCGTGTTCATGTG CATCCACTCTCCAAACCACCCTTTCTCCTCCTCCTTCTGCAAGGACACCCTTTGCTGTGAGCCAGTGGTTCAGTTCCTGGAAGAGAATTTCATATCGTGG GGAGCACTTTTCGACAGAGGGCAAAGCCTCCAAATTGCTTCTTACATTTTAAGGCCAGCGACATTCCCTTGCTGTTCCGTTGTTGCTCCAGCTGCTGCCG ACAACATCAACGTCCTCCAACAGATGGAAGGTCCAATGTCACCACAGCAGTTGCTTGAGATGTTGGAGAGGGCTGTTGATGAACATGGGTTGGCTTTCGG CCATTTGGGGCTAAAGAGAGGAGACGGGGGAAAGCTAGAGCTATGGAGGCCGATGAGAAGATTAGAACTGAACAGAATTCAGCTTAATTATCATGCTACT CTTGTTACAGACCAGATTGTGATCAGGTTTCGGAACGGGGAAAGGAGAGAGCAGAACTTCTCTAGCTCAGGCAAGGTCCAGTCAGTTTTCAAGTATATTA AGCCTTTCAGGAACGGGGAAATACAGATTGGTGTCCAGTTTCCTAGAAGAGTATATGGGGTTGATCAGTCAGGGATGTCACTGAAAGATGTTGGATTACA TCCTAAAATCATATATATGCACTTTAATTTGGTCGATGGTTTCCTTAATTACAGTGTTTATCCCTTGACAGCTTGCTGGGCTTTTGGCGAAAATCCAACC GTATGCAACAAGGACTAG
AA sequence Show only first row Show all	>Lus10039951 pacid=23173543 polypeptide=Lus10039951 locus=Lus10039951.g ID=Lus10039951.BGIv1.0 annot-version=v1.0 MGNGMDRSTSGGNGGRRRDMIPPPDEEFEFLPTFQRQYGTNHPFFYSFRLEEALSIADEERKFVFMCIHSPNHPFSSSFCKDTLCCEPVVQFLEENFISW GALFDRGQSLQIASYILRPATFPCCSVVAPAAADNINVLQQMEGPMSPQQLLEMLERAVDEHGLAFGHLGLKRGDGGKLELWRPMRRLELNRIQLNYHAT LVTDQIVIRFRNGERREQNFSSSGKVQSVFKYIKPFRNGEIQIGVQFPRRVYGVDQSGMSLKDVGLHPKIIYMHFNLVDGFLNYSVYPLTACWAFGENPT VCNKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10790			UBX domain-containing protein ...		Lus10039951 [exp]	0	1
					Lus10034352 [exp]	3.5	0.9635
					Lus10003893 [exp]	3.9	0.9635
					Lus10017955 [exp]	4.0	0.9659
					Lus10002859 [exp]	6.6	0.9609
					Lus10018837 [exp]	8.8	0.9571
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	8.9	0.9595
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	8.9	0.9127
					Lus10009927 [exp]	9.2	0.9557
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	10.0	0.9551
					Lus10039496 [exp]	11.3	0.9554

Compare expression of checked genes

Lus10039951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.