Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63060 295 / 6e-101 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 80 / 3e-17 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 71 / 2e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75170 71 / 3e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G22180 66 / 1e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 63 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G14820 58 / 7e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G05370 51 / 4e-07 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 47 / 8e-06 ATSFH12 SEC14-like 12 (.1) AT5G56160 46 / 2e-05 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027685 [exp] 431 / 4e-154 AT5G63060 334 / 1e-115 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 71 / 4e-14 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10033464 [exp] 70 / 9e-14 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10020911 [exp] 70 / 2e-13 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10004684 [exp] 69 / 2e-13 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 67 / 9e-13 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 66 / 2e-12 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10010804 [exp] 66 / 3e-12 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 63 / 2e-11 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080100 [exp] 333 / 2e-116 AT5G63060 318 / 3e-110 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.012G088350 [exp] 112 / 4e-31 AT5G63060 106 / 7e-29 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 73 / 5e-15 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G261000 [exp] 72 / 2e-14 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 70 / 1e-13 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 68 / 3e-13 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G068700 [exp] 68 / 6e-13 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 66 / 8e-13 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G068000 [exp] 66 / 1e-12 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G135600 [exp] 64 / 5e-12 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10039952 pacid=23173496 polypeptide=Lus10039952 locus=Lus10039952.g ID=Lus10039952.BGIv1.0 annot-version=v1.0 ATGGCGCTCCGGACGTGTCACCATCACTCCTATCGTCAGCCATTGATCTCTGCCGTTAATTTCACTAAATCTTCATCCCGGAGCTTCAAATTTTCGGCTC GTAGCTGTATCCCTGACTCCACTCAATCGAGAAAGCTTGTTTTAGAAGTCAAGGAGAAGCTTGCAAAAGATCATAGGAATCTCCCCGTCGGAAAATGTGG AAAAGAAGATGAAGAGATGATCCTCTGGTTCTTGAAGGATCGTAGATTCTCCGTTGAAGAGACTAAATGGAGACAAGAGTTTGGCGTGAACGAGTTGACT AAAGAGTCGGTGAAAAGTGTAGCAGAAACTGGAAAATCTTATGTGCATGACTTTTGTGATGTTAATGGCAGGCCAGTGCTTCTAGTTGTGGCGTCTAACC ACTTCCCTGGTGTACATGATCCTGTTGAAGATCAGAAGTTGTGTGCATTCCTGATTGAGAAGGCACTAGGGAAGCTACCACCTGGTAAAGATGATATCCT GGGAATAATAGATCTTAGGAACTTCAGTACTAAGAATGCAGACTTGAAGTTCCTTACCTTTCTGTTTGATGTGTTCTACTACTATTATCCAAAGCGGCTT GGTCAAGTGCTCTTTGTAGAAGCTCCCTTTGTATTCAAGCCAATCTGGCAGCTGGCAAAGCCGTTGCTAAAATCTTACACTTCACTGGTGAGATTCTGCT CTGTTGAGACAGTCAGCAAGGAATATTTTACAGAAGAAACTGTGCCTAGCATCTTCAGAGTTTAG
AA sequence Show only first row Show all	>Lus10039952 pacid=23173496 polypeptide=Lus10039952 locus=Lus10039952.g ID=Lus10039952.BGIv1.0 annot-version=v1.0 MALRTCHHHSYRQPLISAVNFTKSSSRSFKFSARSCIPDSTQSRKLVLEVKEKLAKDHRNLPVGKCGKEDEEMILWFLKDRRFSVEETKWRQEFGVNELT KESVKSVAETGKSYVHDFCDVNGRPVLLVVASNHFPGVHDPVEDQKLCAFLIEKALGKLPPGKDDILGIIDLRNFSTKNADLKFLTFLFDVFYYYYPKRL GQVLFVEAPFVFKPIWQLAKPLLKSYTSLVRFCSVETVSKEYFTEETVPSIFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10039952 [exp]	0	1
AT5G46030			unknown protein		Lus10025438 [exp]	3.0	0.8350
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	3.5	0.8065
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	4.5	0.8286
					Lus10002080 [exp]	5.2	0.7905
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	5.3	0.8045
AT3G11591			unknown protein		Lus10016986 [exp]	6.9	0.8167
AT5G57910			unknown protein		Lus10036255 [exp]	9.8	0.8160
AT5G09225			unknown protein		Lus10020870 [exp]	10.6	0.7967
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10021879 [exp]	13.0	0.7146
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	13.0	0.8106

Compare expression of checked genes

Lus10039952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.