Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 241 / 5e-72 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 103 / 1e-23 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14250 102 / 4e-23 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 96 / 7e-21 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 84 / 3e-17 GDA1/CD39 nucleoside phosphatase family protein (.1) AT3G04080 66 / 2e-11 ATAPY1 apyrase 1 (.1) AT5G18280 63 / 2e-10 ATAPY2 apyrase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027686 [exp] 652 / 0 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 223 / 3e-65 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 223 / 8e-65 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 225 / 1e-64 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 167 / 7e-45 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 109 / 1e-25 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 107 / 1e-24 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 74 / 8e-14 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 71 / 5e-13 AT5G18280 558 / 0.0 apyrase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079900 [exp] 401 / 1e-135 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G236900 [exp] 226 / 4e-66 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 83 / 7e-17 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 80 / 6e-16 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.010G169100 [exp] 78 / 3e-15 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.013G053500 [exp] 68 / 5e-12 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 67 / 1e-11 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 63 / 7e-11 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.009G157500 [exp] 64 / 1e-10 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10039953 pacid=23173416 polypeptide=Lus10039953 locus=Lus10039953.g ID=Lus10039953.BGIv1.0 annot-version=v1.0 ATGGGTTATCATTTTTATCTAAACAATATATATATATATATATATATATATATATGTACGGTTGTATTGGATTGTGGTAGCACTGTAACAAGAGTGAATG TATACAAGTGGAAAATATTTCTTTCTGGGGACATTGGTTTGCCTGTTTTAGTTACTTCTTATCCTGAATACTCAACTAGCAGTGGCACTTTGAAAGCTTC TTCCTGTAAGTATCACTGCGTTCAGACTGAGCCAGGCTTGGATAGGTTTGTTGGCAATCCATCAGCTCTGAAATCTTCCCTGGTGCTTTTGATTCGATTG GCCGAGAAGTGGGTGCCTCGTCAAAGACATTCAGAGACCCCGATTTTTGTTCTGGCTACTGCTGGGTTGAGAAGGCTGCGGAGTGAGGATGCTTTGCAGG TTTTGGATGATGTGGAGACTGTTGTAAAGGAACATTCTTTTGTTTTTAGGAAAGAATGGGTTAGAGTTTTGAGTGGGAAAGAGGAAGCTTTCTATGGTTG GGTGGCTTTGAATTATAGGATGGGGAGGCTGGGGAATTCCTCCTCAACCCTGGGACTTCTTGATCTGGGAGGTTCTTCATTGCAGATTGTGACTGAAGTT GGCGACGGTGATATTCGAGGAAGCGAGAACGTGATGATTTCAAAAGTTGGCTTAGTGGAGCATTGGATTTTAGCATATTCATTACCATCTTTTGGTTTGA ACGAGGCATTTGATAGGACAATTTCCATGCTCCGTCAGAATCAAACTGAGCATCCTTGTCTCAGCAGTATTTACACAGGGAAAATGAAGTTGAGGCATCG TGGTAATATAGTCGGTGTCCCAGACTGGAACAAGTGTACAGCTGTAGCAAGAGCTGCAGCAATCAAGTCAAGTAGTTTGAATTTGTCGCACTCCATGGTT GGGAGTAATTGCAAAGCAAGCTTCTCTCGTAATAACAGCAGTAGTAATATCCTGGCGTTGGCGGCTAGTTCTAGCAAAAATCAGCAATTTCATGCTATAT CTGGTTTTTATGCTGTTCACGACATCTTAAATCTGAATCCAAGAGCGAATTTTACAAAGATTTGGGAGAGAGGCAGGGAGCTATGTTCAAAACCATCAGC CAAAATTCGCAGAAAATTCGCAAAGAAGAAGTATGCTAGGCAGTACTGTTTCAGCCTGCCTTATACAGTATCACTCATCCAAGACTTGCTATGTCTTAGC GACAAAGAGATAATATTTGGTCCTGGAGATGTATCGTGGACACTGGAAGCTGCGTTGGTTGAAGGAGACTACCTCTGGCGACCAAGCATTAGTGCTACAG AAGGGAAAATCAATCGTTTCATGAAAAGCATGGATTCCCAATTTTGGTGTTCCTTGTATTGTTGTGCCTTCTAA
AA sequence Show only first row Show all	>Lus10039953 pacid=23173416 polypeptide=Lus10039953 locus=Lus10039953.g ID=Lus10039953.BGIv1.0 annot-version=v1.0 MGYHFYLNNIYIYIYIYICTVVLDCGSTVTRVNVYKWKIFLSGDIGLPVLVTSYPEYSTSSGTLKASSCKYHCVQTEPGLDRFVGNPSALKSSLVLLIRL AEKWVPRQRHSETPIFVLATAGLRRLRSEDALQVLDDVETVVKEHSFVFRKEWVRVLSGKEEAFYGWVALNYRMGRLGNSSSTLGLLDLGGSSLQIVTEV GDGDIRGSENVMISKVGLVEHWILAYSLPSFGLNEAFDRTISMLRQNQTEHPCLSSIYTGKMKLRHRGNIVGVPDWNKCTAVARAAAIKSSSLNLSHSMV GSNCKASFSRNNSSSNILALAASSSKNQQFHAISGFYAVHDILNLNPRANFTKIWERGRELCSKPSAKIRRKFAKKKYARQYCFSLPYTVSLIQDLLCLS DKEIIFGPGDVSWTLEAALVEGDYLWRPSISATEGKINRFMKSMDSQFWCSLYCCAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	0	1
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10009846 [exp]	5.3	0.7846
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	18.3	0.7544
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	20.5	0.7942
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	26.9	0.7598
AT3G05950			RmlC-like cupins superfamily p...		Lus10029571 [exp]	28.7	0.7814
AT5G48350			Polynucleotidyl transferase, r...		Lus10029478 [exp]	36.5	0.7472
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	41.6	0.7005
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	42.7	0.7755
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	46.0	0.7700
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	56.3	0.6898

Compare expression of checked genes

Lus10039953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.